View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12054_low_2 (Length: 425)
Name: NF12054_low_2
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12054_low_2 |
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| [»] scaffold1246 (1 HSPs) |
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Alignment Details
Target: scaffold1246 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold1246
Description:
Target: scaffold1246; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 385 - 1
Alignment:
| Q |
14 |
agggtaactctaaagaaaatgtagttgatcatattcctaataccattgattctataagcctaaatgaatttggaaaaccaaaggttccacaaatggagaa |
113 |
Q |
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| T |
385 |
agggtaactctaaagaaaatgtagttgatcatattcctaataccattgattctataagcctaaatgaatttggaaaaccaaaggttccacaaatggagaa |
286 |
T |
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| Q |
114 |
aactaacaggaatgaagggaagatgaatggaagggaatctaaaaagttgccttttgaagccaatgaagatgttcaaaaaaccaagtttggagatatcatc |
213 |
Q |
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| T |
285 |
aactaacaggaatgaagggaagatgaatggatgggaatctaaaaagtttccttttgaagccaatgaagatgtttaaaaaactaagtttggagatatcatc |
186 |
T |
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| Q |
214 |
caaaagggtgtcacaagggctaagtttgaaagtcaagatgaagatcaagaatgtgttaaagaaaaacttggtaaggacggatttgatgatgcaaagataa |
313 |
Q |
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| T |
185 |
caaaagggtgtcacaagggctaagtttgaaagtcaagatgaagattaagaatgtgttaaagaaaaacttggtaaggacggatttgatgatgcaaagataa |
86 |
T |
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| Q |
314 |
ctatcaatgaagagtttgataagtacttacctaaaaagagtcatgaggcaagggaaggattgaatattcaaaagatggaagaaaa |
398 |
Q |
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| T |
85 |
ctatcaatgaagagtttgataagtacttacctaaaaagagtcatgaggcaagggaaggattgaatgttcaaaagatggaagaaaa |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 13080344 - 13080237
Alignment:
| Q |
300 |
tgatgcaaagataactatcaatgaagagtttgataagtacttacctaaaaagagtcatgaggcaagggaaggattgaatattcaaaagatggaagaaaac |
399 |
Q |
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| T |
13080344 |
tgatgcaaagataactacaaatgaaaattttcctcaaaacttacctaaaaacactcatgaggaaagtgaaggattgaatgttaaacaaatgcaagaaacc |
13080245 |
T |
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| Q |
400 |
aaagatgt |
407 |
Q |
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| T |
13080244 |
aaagatgt |
13080237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 13080540 - 13080486
Alignment:
| Q |
29 |
aaaatgtagttgatcatattcctaataccattgattctataagcctaaatgaatt |
83 |
Q |
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| T |
13080540 |
aaaatgtagttgatcatattcctagtaatattgattttataaaccaaaatgaatt |
13080486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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