View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12054_low_3 (Length: 421)
Name: NF12054_low_3
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12054_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 11922787 - 11923183
Alignment:
| Q |
20 |
ggcagaatcctcttcatttcaatatttagtgccgtgaggtccaagttttgcggcttgtcatcctgaacacagctgcccgaaaaacgtcgctggagttgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11922787 |
ggcagaatcctcttcatttcaatatttagtgccgtgaggtccaagttttgcggcttgtcatcctgaacacagctgcccgaaaaacgtcgccggagttgtt |
11922886 |
T |
|
| Q |
120 |
caccggccgcctgaaacagtgagcattctccttctttctagttttttgacctatgatcaattgctttaggtggnnnnnnnnnaccttttaccttatataa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11922887 |
caccggccgcctgaaacagtgagcattctccttctttctacttttttgacctatgatcaattgctttaggtggtttttttt-accttttaccttatataa |
11922985 |
T |
|
| Q |
220 |
ctttgtgatcaaattttattcataggttaggaactgagaat--ggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagcaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11922986 |
ctttgtgatcaaattttattcataggttagtaactgagaatatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagcaatt |
11923085 |
T |
|
| Q |
318 |
agttgaagcttgtgaaaaaattggttggaagaatccaaaagaaattcaaacagaagttattccacttgcactacaaggttagatgtgatctctgcttc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11923086 |
agttgaagcttgtgaaaaaattggttggaagaatccaaaagaaattcaaacagaagttattccacttgcactacaaggttagatgtgatctttgcttc |
11923183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 415
Target Start/End: Complemental strand, 20525404 - 20525232
Alignment:
| Q |
243 |
aggttaggaactgagaatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagcaattagttgaagcttgtgaaaaaattggt |
342 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || ||| | ||| ||| || ||||||||||||||| | ||| |
|
|
| T |
20525404 |
aggttagaaactgagaatggaggaagagaacaaagaaatgaaatcatttaaggatctcggcttacccgagtcattggtggaagcttgtgaaaaagtgggt |
20525305 |
T |
|
| Q |
343 |
tggaagaatccaaaagaaattcaaacagaagttattccacttgcactacaaggttagatgtgatctctgcttc |
415 |
Q |
| |
|
||||||| |||| || ||||||| ||||| ||||| | ||||||| |||||| ||| |||||| |||||| |
|
|
| T |
20525304 |
tggaagactccactggagattcaaatagaagcaattcctcctgcactagaaggtttgatatgatctatgcttc |
20525232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 30642682 - 30642792
Alignment:
| Q |
243 |
aggttaggaactgagaatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagcaattagttgaagcttgtgaaaaaattggt |
342 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || ||| | ||| ||| || ||||||||||||||||| ||| |
|
|
| T |
30642682 |
aggttagaaactgagaatggaggaagagaacaaagaaatgaaatcatttaaggatctcggcttacccgagtcattggtggaagcttgtgaaaaaatgggt |
30642781 |
T |
|
| Q |
343 |
tggaagaatcc |
353 |
Q |
| |
|
||||||||||| |
|
|
| T |
30642782 |
tggaagaatcc |
30642792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 12119839 - 12119710
Alignment:
| Q |
237 |
attcataggttaggaactgagaatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagcaattagttgaagcttgtgaaaaa |
336 |
Q |
| |
|
||||| || |||| || ||| |||||| ||||||||||||||||| ||||||||||| ||||| || ||| |||| ||| || ||||||| ||||||| |
|
|
| T |
12119839 |
attcacagattagaaagtgataatggaggaagagaataaagaaatcaaatcatttaaagatcttggcttagatgagttattggtggaagcttttgaaaaa |
12119740 |
T |
|
| Q |
337 |
attggttggaagaatccaaaagaaattcaa |
366 |
Q |
| |
|
|| ||||||||||||||||| || |||||| |
|
|
| T |
12119739 |
atgggttggaagaatccaaaggagattcaa |
12119710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 5771475 - 5771554
Alignment:
| Q |
234 |
tttattcataggttaggaactgagaatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagc |
313 |
Q |
| |
|
|||| |||||| |||| ||||||||||||| |||||||||| ||||| |||||||||||||||| | || |||||||||| |
|
|
| T |
5771475 |
tttaatcatagattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctgagc |
5771554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 5765545 - 5765617
Alignment:
| Q |
234 |
tttattcataggttaggaactgagaatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctga |
311 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| || |||||||| |
|
|
| T |
5765545 |
tttaatcataggttagaaactgagaat-----aagagaatatagaaatgaaatcatttaaggatcttggcttatctga |
5765617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 396
Target Start/End: Complemental strand, 29381986 - 29381865
Alignment:
| Q |
275 |
aagaaatgaaatcatttaaggatctgggtttatctgagcaattagttgaagcttgtgaaaaaattggttggaagaatccaaaagaaattcaaacagaagt |
374 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||||| ||||| || ||||||||||||||||| ||||| | | |||| | ||||| |||||||| |
|
|
| T |
29381986 |
aagaaatgaaatcatttacggatttgggcttatctgttcaattggtggaagcttgtgaaaaaatgcgttggtatagtccacttaagattcagacagaagt |
29381887 |
T |
|
| Q |
375 |
tattccacttgcactacaaggt |
396 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
29381886 |
gattccccttgctctacaaggt |
29381865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 7041757 - 7041696
Alignment:
| Q |
275 |
aagaaatgaaatcatttaaggatctgggtttatctgagcaattagttgaagcttgtgaaaaa |
336 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||| ||||| ||||||| |||||||||| |
|
|
| T |
7041757 |
aagaaatgaaatcatttacggatttgggcttatctcttcaattggttgaagtttgtgaaaaa |
7041696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University