View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12054_low_5 (Length: 388)
Name: NF12054_low_5
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12054_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 1900631 - 1901011
Alignment:
| Q |
1 |
gaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
1900631 |
gaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcctttttcgtaaat |
1900730 |
T |
|
| Q |
101 |
aatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatg |
200 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1900731 |
aatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatggggcttcaagaatctaccatg |
1900830 |
T |
|
| Q |
201 |
caagatcg-------------aatataatccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggg |
287 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900831 |
caagatcgagcataacgacataatataatccatccattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggg |
1900930 |
T |
|
| Q |
288 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgat |
368 |
Q |
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| T |
1900931 |
gtatagggaatgaaagaaaaactgtgctacggatgtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgat |
1901011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 1910077 - 1910457
Alignment:
| Q |
1 |
gaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaat |
100 |
Q |
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| T |
1910077 |
gaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcctttttcgtaaat |
1910176 |
T |
|
| Q |
101 |
aatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatg |
200 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1910177 |
aatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatggggcttcaagaatctaccatg |
1910276 |
T |
|
| Q |
201 |
caagatcg-------------aatataatccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggg |
287 |
Q |
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| T |
1910277 |
caagatcgagcataacgacataatataatccatccattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggg |
1910376 |
T |
|
| Q |
288 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgat |
368 |
Q |
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| T |
1910377 |
gtatagggaatgaaagaaaaactgtgctacggatgtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgat |
1910457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 42 - 275
Target Start/End: Original strand, 1893770 - 1894016
Alignment:
| Q |
42 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
141 |
Q |
| |
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||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
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| T |
1893770 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1893869 |
T |
|
| Q |
142 |
attaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatgcaagatcg-------------aatataatccatccattaag |
228 |
Q |
| |
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||||||||||||| ||| ||||| ||||| |||||||||| || |||||||||||| ||||| | |||| ||||||||||||||| |
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| T |
1893870 |
gttaggttctgggtccctgacaggctatattgtaaatggggcatcgtgaatctaccatgaaagatagagcataacgacgtaatagaatccatccattaag |
1893969 |
T |
|
| Q |
229 |
atgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
275 |
Q |
| |
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| ||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
1893970 |
ttatacatacgaatagactctactcaaatgactctcccttggcaagt |
1894016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 42 - 275
Target Start/End: Original strand, 1903216 - 1903462
Alignment:
| Q |
42 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
141 |
Q |
| |
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||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
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| T |
1903216 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1903315 |
T |
|
| Q |
142 |
attaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatgcaagatcg-------------aatataatccatccattaag |
228 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| || |||||||||||| ||||| | |||| ||||||||||||||| |
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| T |
1903316 |
gttaggttctgggtccctgacaggctatattgtaaatggggcatcgtgaatctaccatgaaagatagagcataacgacgtaatagaatccatccattaag |
1903415 |
T |
|
| Q |
229 |
atgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
275 |
Q |
| |
|
| ||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
1903416 |
ttatacatacgaatagactctactcaaatgactctcccttggcaagt |
1903462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 2934605 - 2934446
Alignment:
| Q |
40 |
gaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttat |
139 |
Q |
| |
|
||||||||| ||||| || |||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| | |
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| T |
2934605 |
gaggagctttcctctgggcagtaggagtaccgttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttct |
2934513 |
T |
|
| Q |
140 |
ccattaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatgcaagat |
206 |
Q |
| |
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|| ||||||||| ||| ||||||||| || || |||||||||| ||| |||||||||||||||||| |
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|
| T |
2934512 |
ccgttaggttctaggtccctaacaggctacattgtaaatggggcatcatgaatctaccatgcaagat |
2934446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 1894058 - 1894134
Alignment:
| Q |
288 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| |
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| T |
1894058 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgt |
1894134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 1903504 - 1903580
Alignment:
| Q |
288 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgt |
364 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| |
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| T |
1903504 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgt |
1903580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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