View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12054_low_6 (Length: 384)
Name: NF12054_low_6
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12054_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 6345457 - 6345804
Alignment:
| Q |
20 |
ggggatgcgggaaaaagccccaaacaattttcgtgtatcgttactatgtctcttgtatttgtagtacactgtcctttttatgtcaagaaaacgtttagat |
119 |
Q |
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| T |
6345457 |
ggggatgcaggaaaaagccccaaacaattttcgtgtatcgttactatgtctcttgtatttgtagtacactgtcctttttatgtcaagaaaacgtttagat |
6345556 |
T |
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| Q |
120 |
gagttggggggtcgaaatggtcagaaaaagttttatggttaaaagagttggtgacataggtatttatatctaccaattagtacatcattgtattatcaag |
219 |
Q |
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| T |
6345557 |
gagttggggggtcgaaatgttcagaaaaagttttatggttaaaagagttgttgacataggtatttatatctaccaattagtacatcattgcattatcaag |
6345656 |
T |
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| Q |
220 |
atttgtttagttgnnnnnnnttaactcatcctgcaaaggtttcagttgaactcccactcttggctaaaggacctcataggtagataacctttaagaattt |
319 |
Q |
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| T |
6345657 |
atttgtttagttgaaaaagattaactcatcctgcaaaggtttcggttgaactcccactcttggctaaacgacctcataggtagataacctttaagtattt |
6345756 |
T |
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| Q |
320 |
ttgtgaacgttttttgaatcttaaaagttttactttgatcacgatgaac |
368 |
Q |
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| T |
6345757 |
ttgttaacgttttttgaatctt-aaagttttactttgatcacggtgaac |
6345804 |
T |
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