View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12054_low_7 (Length: 350)
Name: NF12054_low_7
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12054_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 24859831 - 24859978
Alignment:
| Q |
14 |
cataggcatggactactgatccaaaatcgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactattta |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24859831 |
cataagcatggactactgatccaaaatcgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactgatta |
24859930 |
T |
|
| Q |
114 |
caattattcatagactttgattcatgatccttattataatttttacat |
161 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24859931 |
caattattcatggactttgattcatgatccttattataatttttacat |
24859978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 24859976 - 24860085
Alignment:
| Q |
241 |
catctcctgtttaaaaaatcttatctcctcatttacacttatccagctattggttctttcacagtcacacggatcacgatccgtgccatcactcaactaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24859976 |
catctcctgtttaaaaaatcttatctccccatttacacttatccagctattggttctttcacagtcacacggatcacgatccgtgccatcactcaactaa |
24860075 |
T |
|
| Q |
341 |
ccaccacaac |
350 |
Q |
| |
|
|||| ||||| |
|
|
| T |
24860076 |
ccactacaac |
24860085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 23632004 - 23632053
Alignment:
| Q |
123 |
atagactttgattcatgatccttattataatttttacatataacactata |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
23632004 |
atagactttgattcatgatccttattatcatttttacatataacgctata |
23632053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 9396669 - 9396624
Alignment:
| Q |
127 |
actttgattcatgatccttattataatttttacatataacactata |
172 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
9396669 |
actttgattcataatccttgttatcatttttacatataacactata |
9396624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 27316318 - 27316193
Alignment:
| Q |
21 |
atggactactgatccaaaatcg--ttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactatttacaatt |
118 |
Q |
| |
|
||||||||||| ||||||| | ||| ||||||||| ||| |||||||||||||||||| | ||||| ||||||| ||||||||||| | || ||| |
|
|
| T |
27316318 |
atggactactggtccaaaaaccatttctctttgcaaaattagtttaatttcgcatcaaattcatctttcaatttactcaatcattttaccgtctataatc |
27316219 |
T |
|
| Q |
119 |
attcatagactttgattcatgatcct |
144 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27316218 |
cttcatagactttgattcatgatcct |
27316193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 9924376 - 9924343
Alignment:
| Q |
131 |
tgattcatgatccttattataatttttacatata |
164 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
9924376 |
tgattcatgatcctcattataatttttacatata |
9924343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University