View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12054_low_8 (Length: 277)

Name: NF12054_low_8
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12054_low_8
NF12054_low_8
[»] chr8 (10 HSPs)
chr8 (143-277)||(18982165-18982299)
chr8 (143-277)||(4706965-4707099)
chr8 (143-277)||(15924682-15924816)
chr8 (143-277)||(26340792-26340925)
chr8 (151-275)||(26917610-26917735)
chr8 (212-272)||(18982048-18982109)
chr8 (212-272)||(26917793-26917854)
chr8 (212-269)||(15924568-15924626)
chr8 (210-273)||(26340980-26341044)
chr8 (212-269)||(4707155-4707213)
[»] chr3 (19 HSPs)
chr3 (143-277)||(19434751-19434885)
chr3 (143-277)||(6911647-6911781)
chr3 (143-277)||(28058766-28058900)
chr3 (143-277)||(28069191-28069325)
chr3 (143-277)||(28103560-28103694)
chr3 (151-277)||(5705863-5705989)
chr3 (173-230)||(17955275-17955332)
chr3 (212-272)||(6911837-6911898)
chr3 (212-272)||(28103443-28103504)
chr3 (210-269)||(5706042-5706102)
chr3 (143-223)||(11200493-11200575)
chr3 (143-250)||(17955085-17955191)
chr3 (212-269)||(19434637-19434695)
chr3 (212-269)||(28058956-28059014)
chr3 (212-269)||(28069381-28069439)
chr3 (226-274)||(17958738-17958787)
chr3 (173-246)||(9436522-9436596)
chr3 (217-273)||(9436688-9436745)
chr3 (211-252)||(11200341-11200382)
[»] chr1 (17 HSPs)
chr1 (143-277)||(14650018-14650152)
chr1 (143-277)||(14659809-14659943)
chr1 (143-277)||(47050830-47050964)
chr1 (143-277)||(16100489-16100623)
chr1 (143-277)||(17653709-17653843)
chr1 (143-277)||(29289344-29289476)
chr1 (143-277)||(17479033-17479168)
chr1 (143-277)||(10991488-10991623)
chr1 (192-272)||(17479243-17479324)
chr1 (212-272)||(14649902-14649963)
chr1 (212-272)||(14659692-14659753)
chr1 (212-272)||(29289532-29289593)
chr1 (212-272)||(47051020-47051081)
chr1 (210-273)||(10991677-10991741)
chr1 (212-269)||(17653899-17653957)
chr1 (143-237)||(26143498-26143593)
chr1 (212-272)||(16100372-16100433)
[»] chr4 (15 HSPs)
chr4 (143-277)||(4763810-4763944)
chr4 (143-277)||(27561472-27561606)
chr4 (143-277)||(54352162-54352296)
chr4 (151-277)||(18694491-18694617)
chr4 (143-274)||(5358918-5359050)
chr4 (150-277)||(27734042-27734170)
chr4 (151-277)||(51533405-51533531)
chr4 (151-277)||(11513079-11513206)
chr4 (176-277)||(27733906-27734009)
chr4 (212-272)||(4764000-4764061)
chr4 (210-269)||(51533292-51533352)
chr4 (210-269)||(18694670-18694730)
chr4 (212-269)||(27561662-27561720)
chr4 (212-273)||(27734226-27734288)
chr4 (212-273)||(11513263-11513325)
[»] chr2 (29 HSPs)
chr2 (143-277)||(808984-809118)
chr2 (143-277)||(2587900-2588033)
chr2 (143-277)||(44323823-44323957)
chr2 (143-277)||(45331745-45331879)
chr2 (160-277)||(31713688-31713805)
chr2 (160-277)||(39154990-39155107)
chr2 (174-277)||(4405648-4405753)
chr2 (185-277)||(10415591-10415684)
chr2 (174-277)||(26894773-26894878)
chr2 (174-277)||(26900212-26900317)
chr2 (173-274)||(9311380-9311484)
chr2 (143-272)||(4696374-4696505)
chr2 (176-271)||(9311516-9311614)
chr2 (176-277)||(9311649-9311752)
chr2 (145-249)||(26894582-26894687)
chr2 (145-249)||(26900021-26900126)
chr2 (143-250)||(4405838-4405946)
chr2 (173-277)||(15001066-15001172)
chr2 (212-272)||(4405531-4405592)
chr2 (212-272)||(45331628-45331689)
chr2 (212-273)||(10415473-10415535)
chr2 (212-269)||(44323709-44323767)
chr2 (217-269)||(31713574-31713627)
chr2 (217-269)||(39155168-39155221)
chr2 (217-272)||(4696253-4696309)
chr2 (210-269)||(9311805-9311865)
chr2 (212-269)||(809174-809232)
chr2 (217-270)||(2587785-2587839)
chr2 (228-273)||(15001247-15001293)
[»] chr5 (9 HSPs)
chr5 (143-277)||(5519787-5519921)
chr5 (143-277)||(42785234-42785368)
chr5 (151-277)||(27198631-27198759)
chr5 (185-277)||(15598333-15598426)
chr5 (212-269)||(5519977-5520035)
chr5 (212-269)||(42785120-42785178)
chr5 (186-237)||(15598534-15598585)
chr5 (212-273)||(15598215-15598277)
chr5 (212-272)||(27198813-27198874)
[»] chr6 (28 HSPs)
chr6 (147-277)||(28040445-28040575)
chr6 (143-277)||(33055384-33055518)
chr6 (143-277)||(33062767-33062901)
chr6 (143-277)||(27526985-27527120)
chr6 (143-277)||(22013715-22013849)
chr6 (143-277)||(25478574-25478712)
chr6 (160-277)||(27683841-27683958)
chr6 (160-277)||(27691160-27691277)
chr6 (169-277)||(17355227-17355336)
chr6 (173-277)||(13142491-13142596)
chr6 (176-277)||(9814558-9814661)
chr6 (143-277)||(30129970-30130105)
chr6 (175-277)||(6952023-6952126)
chr6 (185-275)||(15970732-15970823)
chr6 (212-273)||(17355109-17355171)
chr6 (212-269)||(9814444-9814502)
chr6 (173-249)||(9814749-9814826)
chr6 (212-272)||(27526868-27526929)
chr6 (151-221)||(27650850-27650921)
chr6 (212-269)||(22013601-22013659)
chr6 (217-269)||(27683727-27683780)
chr6 (217-269)||(27691048-27691101)
chr6 (212-272)||(25478768-25478829)
chr6 (212-272)||(33055267-33055328)
chr6 (212-272)||(33062650-33062711)
chr6 (212-269)||(13142651-13142709)
chr6 (210-269)||(27650678-27650741)
chr6 (223-268)||(28040331-28040377)
[»] scaffold0406 (2 HSPs)
scaffold0406 (143-275)||(3401-3532)
scaffold0406 (212-272)||(3282-3343)
[»] chr7 (8 HSPs)
chr7 (145-277)||(28803305-28803437)
chr7 (143-277)||(44060341-44060477)
chr7 (185-277)||(36264587-36264680)
chr7 (176-275)||(36264736-36264835)
chr7 (212-269)||(44060533-44060591)
chr7 (212-272)||(28803188-28803249)
chr7 (212-272)||(36264893-36264954)
chr7 (220-269)||(22010864-22010914)
[»] scaffold0438 (4 HSPs)
scaffold0438 (143-277)||(7970-8105)
scaffold0438 (143-277)||(10953-11086)
scaffold0438 (210-273)||(8160-8224)
scaffold0438 (210-273)||(11141-11205)
[»] scaffold0713 (2 HSPs)
scaffold0713 (145-277)||(533-664)
scaffold0713 (210-269)||(419-479)
[»] scaffold0007 (3 HSPs)
scaffold0007 (173-277)||(60228-60334)
scaffold0007 (185-277)||(60391-60484)
scaffold0007 (212-269)||(60113-60171)
[»] scaffold0002 (5 HSPs)
scaffold0002 (217-273)||(413410-413467)
scaffold0002 (173-223)||(407241-407292)
scaffold0002 (217-273)||(424792-424849)
scaffold0002 (173-223)||(424624-424675)
scaffold0002 (185-223)||(413255-413293)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 18982299 - 18982165
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18982299 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 18982200  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  18982199 gcctttccatggggcggctccatctaacggatagc 18982165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 4706965 - 4707099
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4706965 ctttaaataaagtatagaaatccaagtttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 4707064  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  4707065 gcctttccatggggcggctccatctaacggatagc 4707099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 15924816 - 15924682
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15924816 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 15924717  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||| ||||||||||||||||||||    
T  15924716 gcctttccatggggtggctccatctaacggatagc 15924682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 26340792 - 26340925
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  26340792 ctttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagcc--ctcctccaaatggtg 26340889  T
Q  243 gcctttccat-ggggcggctccatctaacggatagc 277  Q
    |||||||||| |||||||||||||||||||||||||    
T  26340890 gcctttccataggggcggctccatctaacggatagc 26340925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 26917610 - 26917735
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc 250  Q
    |||||||| ||||| |||||| | |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  26917610 aaagtataaaaatccaactttagcgaaaataatctaatgggtgaatcgagaactagcttcatctcgttgatagcactctcttcctaatggtggcctttcc 26917709  T
Q  251 at-ggggcggctccatctaacggata 275  Q
    || |||||| ||||||||||||||||    
T  26917710 ataggggcgactccatctaacggata 26917735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 18982109 - 18982048
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  18982109 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 18982048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 26917793 - 26917854
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  26917793 tctcattgatagccctctcctcctaatggtggcctttccatcggggcggctccatccaacgg 26917854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 15924626 - 15924568
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  15924626 tctcattgatagccctctcctcctaatggtggcctttccatagtggcggctccatctaa 15924568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 26340980 - 26341044
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  26340980 catctcattgatagccctttcctcctaatggcggcctttccataggggcggctccatttaacgga 26341044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 4707155 - 4707213
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  4707155 tctcattgatagccctctcctcctaatggcggcctttccataggggtggctccatctaa 4707213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 19434885 - 19434751
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19434885 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 19434786  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  19434785 gcctttccatggggcggctccatctaacggatagc 19434751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 6911647 - 6911781
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6911647 ctttaaataaagtttagaaatctaactttggtgaaaataatcaaaggggtgaatcgagaactagctccatctcgttgatagccatctcctcctaatggtg 6911746  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  6911747 gcctttccatggggcggctccatctaacggatagc 6911781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 28058766 - 28058900
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28058766 ctttaaataaagtatagaaatccaactttaatgaaaataatcaaatgggtgaatcgagcactagctccatctcgttgatagccctctcctcctaatggtg 28058865  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  28058866 gcctttccatggggcggctccatctaacggatagc 28058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 28069191 - 28069325
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28069191 ctttaaataaagtatagaaatccaactttaatgaaaataatcaaatgggtgaatcgagcactagctccatctcgttgatagccctctcctcctaatggtg 28069290  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  28069291 gcctttccatggggcggctccatctaacggatagc 28069325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 28103694 - 28103560
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28103694 ctttaaataaagtataaaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 28103595  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    || ||||||||||||| ||||||||||||||||||    
T  28103594 gcatttccatggggcgactccatctaacggatagc 28103560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 5705863 - 5705989
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc 250  Q
    ||||||| |||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  5705863 aaagtattgaaatccaactttaatgaaaataaccaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggccttcct 5705962  T
Q  251 atggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||    
T  5705963 atggggcggctccatctaacggatagc 5705989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 17955275 - 17955332
Alignment:
Q  173 gtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctc 230  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17955275 gtgaaaataatcaaatgtgtgaatcgagaactagctccatctcgttgatagccctctc 17955332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 6911837 - 6911898
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  6911837 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 6911898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 28103504 - 28103443
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28103504 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 28103443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 5706042 - 5706102
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaa 269  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  5706042 catctcattgatagccctctcctcctaatggcggcctttccattggggcggctccatctaa 5706102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 11200575 - 11200493
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaa--tgggtgaatcgagaactagctccatctcgttgatag 223  Q
    |||||||||||||| | ||||  |||||| |||||||||||||||  | |||||||||||||||||||||||||| |||||||    
T  11200575 ctttaaataaagtacataaattcaactttagtgaaaataatcaaaatttggtgaatcgagaactagctccatctcattgatag 11200493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 17955085 - 17955191
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||| |||||||| || || ||||||  ||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || | || ||||  |||    
T  17955085 ctttaaagaaagtataaaactccaactttaatgaaaataatcaa-tgggtgaatcgagaactagcttcatttcgttgatagctcttttctactaagagtg 17955183  T
Q  243 gcctttcc 250  Q
    ||||||||    
T  17955184 gcctttcc 17955191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 19434695 - 19434637
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  19434695 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 19434637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 28058956 - 28059014
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28058956 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 28059014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 28069381 - 28069439
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28069381 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 28069439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 17958738 - 17958787
Alignment:
Q  226 ctctcctcctaatggtggcctttccat-ggggcggctccatctaacggat 274  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  17958738 ctctcctcctaatggtggcctttccataggagcgactccatctaacggat 17958787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 9436522 - 9436596
Alignment:
Q  173 gtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcct 246  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||| |||||||| || |||| ||||  |||||||    
T  9436522 gtgaaaataattaaaattggtgaatcgagaactagctctatctcattgatagctctttccttctaagagtggcct 9436596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 9436688 - 9436745
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||||||||||||||| |||||| ||||| |||| |||||  ||||||||||||||    
T  9436688 ttgatagccctctcctcccaatggtagccttcccataggggcaactccatctaacgga 9436745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 11200382 - 11200341
Alignment:
Q  211 atctcgttgatagccctctcctcctaatggtggcctttccat 252  Q
    ||||| ||||| |||||||||||||||||||| |||||||||    
T  11200382 atctcattgatggccctctcctcctaatggtgacctttccat 11200341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 14650152 - 14650018
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14650152 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 14650053  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  14650052 gcctttccatggggcggctccatctaacggatagc 14650018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 14659943 - 14659809
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659943 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 14659844  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  14659843 gcctttccatggggcggctccatctaacggatagc 14659809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 47050830 - 47050964
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47050830 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 47050929  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  47050930 gcctttccatggggcggctccatctaacggatagc 47050964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 16100623 - 16100489
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16100623 ctttaaataaagtatagaaatctaactttagtgaaaatactcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 16100524  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  16100523 gcctttccatggggcggctccatctaacggatagc 16100489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 17653709 - 17653843
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17653709 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 17653808  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  17653809 gcctttccatggggcggctccatctaacggatagc 17653843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 29289344 - 29289476
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29289344 ctttaaataaagtataaaaatctaactttggtgaaaataatcaaatgg-tgaatcgagaactagctccatctcgttgatagccctctcct-ctaatggtg 29289441  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  29289442 gcctttccatggggcggctccatctaacggatagc 29289476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 17479033 - 17479168
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||| ||| |||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17479033 ctttaaagaaaatataaaaatccaactttagtgacaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 17479132  T
Q  243 gcctttccat-ggggcggctccatctaacggatagc 277  Q
    | |||||||| |||||||||||||||||||||||||    
T  17479133 gtctttccataggggcggctccatctaacggatagc 17479168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 10991488 - 10991623
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||| ||    
T  10991488 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatctcgttgatagtcttctcctcctaatgatg 10991587  T
Q  243 gcctttccat-ggggcggctccatctaacggatagc 277  Q
    |||||||||| |||||||||| ||||| ||||||||    
T  10991588 gcctttccataggggcggctcaatctatcggatagc 10991623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 17479243 - 17479324
Alignment:
Q  192 tgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  17479243 tgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcttttccattggggcggctccatctaacgg 17479324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 14649963 - 14649902
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  14649963 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 14649902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 14659753 - 14659692
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  14659753 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 14659692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 29289532 - 29289593
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  29289532 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 29289593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 47051020 - 47051081
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  47051020 tctcattgatagccctctcctcctaatggaggcctttccataggggcggctccatctaacgg 47051081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 10991677 - 10991741
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  10991677 catctcatcgatagccctctcctcctaatggtggcctttccataggggcggctccacctaacgga 10991741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 17653899 - 17653957
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  17653899 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 17653957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 26143498 - 26143593
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaa 237  Q
    ||||||| |||||||||||| || | ||| || |||||||||||| |||||| |||||||||||| | ||||||||||||||| || |||| ||||    
T  26143498 ctttaaagaaagtatagaaaactcaatttagttaaaataatcaaaatgggtggatcgagaactagattcatctcgttgatagctctttccttctaa 26143593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 16100433 - 16100372
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| ||||||||||||||||||||||||  |||||||||| |||||||||||||| |||||    
T  16100433 tctcattgatagccctctcctcctaatggcagcctttccataggggcggctccatccaacgg 16100372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 4763810 - 4763944
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4763810 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 4763909  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    ||||||||||||||||||||||||||| |||||||    
T  4763910 gcctttccatggggcggctccatctaatggatagc 4763944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 27561472 - 27561606
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27561472 ctttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 27561571  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  27561572 gcctttccatggggcggctccatctaacggatagc 27561606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 54352162 - 54352296
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54352162 ctttaaataaagtataaaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 54352261  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    ||||| |||||||||||||||||||||| ||||||    
T  54352262 gccttcccatggggcggctccatctaacagatagc 54352296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 18694491 - 18694617
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc 250  Q
    ||||||| |||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18694491 aaagtattgaaatccaactttaatgaaaataaccaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggccttccc 18694590  T
Q  251 atggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||    
T  18694591 atggggcggctccatctaacggatagc 18694617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 5358918 - 5359050
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  5358918 ctttaaataaagtatagaaatccaacttttgtaaaaataaataaatgggtgaatcgagaactatctccatcttgttgatagtcctctcctcctaatggtg 5359017  T
Q  243 gcctttccat-ggggcggctccatctaacggat 274  Q
    |||||||||| ||||||||||||||||||||||    
T  5359018 gcctttccataggggcggctccatctaacggat 5359050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 150 - 277
Target Start/End: Original strand, 27734042 - 27734170
Alignment:
Q  150 taaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttc 249  Q
    |||||||||| || || | ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27734042 taaagtatagtaaactcaatttagtaaaaataatcaaatgggtgaatcgagaactatctccatctcgttgatagccctctcctcctaatggtggcctttc 27734141  T
Q  250 cat-ggggcggctccatctaacggatagc 277  Q
    ||| ||||| |||||||||||||||||||    
T  27734142 cataggggcagctccatctaacggatagc 27734170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 51533531 - 51533405
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc 250  Q
    ||||||| |||||| ||||||    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51533531 aaagtattgaaatccaactttaactaaaataaccaaatgagtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggccttccc 51533432  T
Q  251 atggggcggctccatctaacggatagc 277  Q
    ||||||||||||||| |||||||||||    
T  51533431 atggggcggctccatataacggatagc 51533405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 11513079 - 11513206
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc 250  Q
    |||||||| ||||| || ||| ||||| |||   |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  11513079 aaagtataaaaatccaattttagtgaatatatcaaaatggttgaatcgagaactacctccatctcgttgatagccctctcctcctaatggtggccttttc 11513178  T
Q  251 at-ggggcggctccatctaacggatagc 277  Q
    || ||| |  ||||||||||||||||||    
T  11513179 atagggacaactccatctaacggatagc 11513206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 27733906 - 27734009
Alignment:
Q  176 aaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  ||| |||||||||||    
T  27733906 aaaataatcaaaatggatgaattgagaactagctccatctcgttgatagccgtctcctcctaatggtggcttttccataggggaagcttcatctaacgga 27734005  T
Q  274 tagc 277  Q
    ||||    
T  27734006 tagc 27734009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 4764000 - 4764061
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4764000 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 4764061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 51533352 - 51533292
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaa 269  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  51533352 catctcattgatagccctctcctcctaatggcggcctttccattggggcggctccatctaa 51533292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 18694670 - 18694730
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaa 269  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  18694670 catctcattgatagccctctcctcctaatggcggcctttccattggggtggctccatctaa 18694730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 27561662 - 27561720
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  27561662 tctcattgatagccccctcctcctaatggcggcctttccataggggcggctccatctaa 27561720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 27734226 - 27734288
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||| ||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||    
T  27734226 tctcattgatagccctctcctcctaatggcaacctttccataggggcggctccatctaacgga 27734288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 11513263 - 11513325
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||| |||||||||||||||| ||||| |  |||||||||| ||| |||||||||||||||||    
T  11513263 tctcattgatagccctctccttctaatagcagcctttccatagggtcggctccatctaacgga 11513325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 808984 - 809118
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  808984 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 809083  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  809084 gcctttccatggggcggctccatctaacggatagc 809118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 2588033 - 2587900
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2588033 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctcc-tctcgttgatagccctctcctcctaatggtg 2587935  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  2587934 gcctttccatggggcggctccatctaacggatagc 2587900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 44323957 - 44323823
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44323957 ctttaaataaagtatagaaatccaagtttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 44323858  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  44323857 gcctttccatggggcggctccatctaacggatagc 44323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 45331879 - 45331745
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45331879 ctttaaataaagtataaaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 45331780  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    || ||||||||||||| ||||||||||||||||||    
T  45331779 gcatttccatggggcgactccatctaacggatagc 45331745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 31713805 - 31713688
Alignment:
Q  160 aaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 259  Q
    ||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31713805 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 31713706  T
Q  260 ctccatctaacggatagc 277  Q
    ||||||||||||||||||    
T  31713705 ctccatctaacggatagc 31713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 39154990 - 39155107
Alignment:
Q  160 aaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 259  Q
    ||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39154990 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 39155089  T
Q  260 ctccatctaacggatagc 277  Q
    ||||||||||||||||||    
T  39155090 ctccatctaacggatagc 39155107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 4405753 - 4405648
Alignment:
Q  174 tgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacg 271  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  4405753 tgaaaataatcaaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggccttcccataggggcggctccatttaacg 4405654  T
Q  272 gatagc 277  Q
    ||||||    
T  4405653 gatagc 4405648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 10415684 - 10415591
Alignment:
Q  185 aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacggatagc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10415684 aaatgggtgaatcgagaactagctccatctcgttgatagccctcttctcctaatggtggcctttccataggggcggctccatctaacggatagc 10415591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 26894773 - 26894878
Alignment:
Q  174 tgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc-atggggcggctccatctaacg 271  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  26894773 tgaaaataatcaaaatgggtgaatcgagaacaagctccatctcgttaatagccctctcctcctaatggtggcctttccaatggggcggctccatataacg 26894872  T
Q  272 gatagc 277  Q
    ||||||    
T  26894873 gatagc 26894878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 26900212 - 26900317
Alignment:
Q  174 tgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc-atggggcggctccatctaacg 271  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  26900212 tgaaaataatcaaaatgggtgaatcgagaacaagctccatctcgttaatagccctctcctcctaatggtggcctttccaatggggcggctccatataacg 26900311  T
Q  272 gatagc 277  Q
    ||||||    
T  26900312 gatagc 26900317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 9311380 - 9311484
Alignment:
Q  173 gtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcc-tttccat-ggggcggctccatctaa 269  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  9311380 gtgaaaataaacaaaatggatgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggccttttccataggggcggctccatctaa 9311479  T
Q  270 cggat 274  Q
    |||||    
T  9311480 cggat 9311484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 4696505 - 4696374
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggt 241  Q
    ||||||| ||| |||||||| ||   ||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4696505 ctttaaagaaaatatagaaaactccatttagtaaaaataatcaaaatgggtgaatcgagaactagctccatctcgttgatagccctatcctcctaatggt 4696406  T
Q  242 ggcctttccat-ggggcggctccatctaacgg 272  Q
    | |||||||||  |||||||||||||||||||    
T  4696405 gtcctttccatatgggcggctccatctaacgg 4696374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 9311516 - 9311614
Alignment:
Q  176 aaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcc-tttccat-ggggcggctccatctaacg 271  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  9311516 aaaataatcaaaatgggtgaattgagaactagctccatcttgttgatagccctttcctcctaatggtggccttttccataggggcggctccatctaacg 9311614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 9311649 - 9311752
Alignment:
Q  176 aaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggc-ctttccat-ggggcggctccatctaacgg 272  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||  ||| ||| ||||||||||||||||||||    
T  9311649 aaaataatcaaaatgggtgaatcgagaactagcttcatctcgttgatagccctctcct-ctaatggtggcatttttcataggggcggctccatctaacgg 9311747  T
Q  273 atagc 277  Q
    |||||    
T  9311748 atagc 9311752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 26894582 - 26894687
Alignment:
Q  145 ttaaataaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtgg 243  Q
    ||||| |||||||||||| ||   ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||    
T  26894582 ttaaagaaagtatagaaaactccatttagtgaaactaatcaaaatgggtgaatcgagaactagctccatctcgttgatagctctttcctgctaagagtgg 26894681  T
Q  244 cctttc 249  Q
    ||||||    
T  26894682 cctttc 26894687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 26900021 - 26900126
Alignment:
Q  145 ttaaataaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtgg 243  Q
    ||||| |||||||||||| ||   ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||    
T  26900021 ttaaagaaagtatagaaaactccatttagtgaaactaatcaaaatgggtgaatcgagaactagctccatctcgttgatagctctttcctgctaagagtgg 26900120  T
Q  244 cctttc 249  Q
    ||||||    
T  26900121 cctttc 26900126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 4405946 - 4405838
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatc-aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggt 241  Q
    |||||||  ||||||||||| ||   ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||  ||    
T  4405946 ctttaaagcaagtatagaaaactccatttagtgaaagtaatcgaaatgggtgaatcgagaactagctccatctcgttgatagctctttcctactaagagt 4405847  T
Q  242 ggcctttcc 250  Q
    |||||||||    
T  4405846 ggcctttcc 4405838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 15001066 - 15001172
Alignment:
Q  173 gtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcc-tttccat-ggggcggctccatctaa 269  Q
    |||||||||| |||| |||||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||||| |||||||  |||| |||||||||||    
T  15001066 gtgaaaataaacaaaatgggtgaatccagaactaactccatctcgtagatag-cctctccacctaatggtggccttttccataagggcagctccatctaa 15001164  T
Q  270 cggatagc 277  Q
    ||||||||    
T  15001165 cggatagc 15001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 4405592 - 4405531
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4405592 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 4405531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 45331689 - 45331628
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  45331689 tctcattgatagccctctcctcctaatggaggcctttccataggggcggctccatctaacgg 45331628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 10415535 - 10415473
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  10415535 tctcattgatagccctctcctcctaatggcggcctttccataggggtggctccatctaacgga 10415473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 44323767 - 44323709
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  44323767 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 44323709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 31713627 - 31713574
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  31713627 ttgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 31713574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 39155168 - 39155221
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  39155168 ttgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 39155221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 4696309 - 4696253
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  4696309 ttgatagccctctcctcctaatgacggcctttccataggggcggctccatctaacgg 4696253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 9311805 - 9311865
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaa 269  Q
    ||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||||||    
T  9311805 catctcgttgatagctctctcctcctaatggatgcctttccattggggcggctccatctaa 9311865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 809174 - 809232
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| ||||||||||||||||||||||||  |||||||||| |||||||||||||||||    
T  809174 tctcattgatagccctctcctcctaatggcagcctttccataggggcggctccatctaa 809232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 2587839 - 2587785
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaac 270  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  2587839 ttgatagccctctccttctaatggcggcctttccataggggcggctccatctaac 2587785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 15001247 - 15001293
Alignment:
Q  228 ctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  15001247 ctcctcctaatggcggcctttccataggggcggctccatctaacgga 15001293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 5519787 - 5519921
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5519787 ctttaaataaattatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 5519886  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  5519887 gcctttccatggggcggctccatctaacggatagc 5519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 42785368 - 42785234
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42785368 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagtcctctcctcctaatggtg 42785269  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  42785268 gcctttccatggggcggctccatctaacggatagc 42785234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 27198631 - 27198759
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttc 249  Q
    |||||| | ||||| ||||||  |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  27198631 aaagtaaataaatccaactttaatgaaaataatcaaaatgggtgaatcgagaactagtttcatctcgttgatagccctctcctcctaatggtgccctttc 27198730  T
Q  250 cat-ggggcggctccatctaacggatagc 277  Q
    ||| |||||||||||||||||||||||||    
T  27198731 cataggggcggctccatctaacggatagc 27198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 15598426 - 15598333
Alignment:
Q  185 aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacggatagc 277  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  15598426 aaatgggtgaattgagaactagcttcatctcgttgatagccctctcctcctaatggtggcctttccataggggcggctccatccaacagatagc 15598333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 5519977 - 5520035
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5519977 tctcattgatagccctctcctcctaatggtggcctttccataggggcggctccatctaa 5520035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 42785178 - 42785120
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  42785178 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 42785120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 15598585 - 15598534
Alignment:
Q  186 aatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaa 237  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||| ||||    
T  15598585 aatggatgaatcgagaactagctccatctcgttgatagctctttcctactaa 15598534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 15598277 - 15598215
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgga 273  Q
    |||| ||||||||||||||||||||||||  | ||||||| |||||||||| |||||||||||    
T  15598277 tctcattgatagccctctcctcctaatggcagtctttccattggggcggctacatctaacgga 15598215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 27198813 - 27198874
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  27198813 tctcattgatagccctctcctcctaatgacggtctttccataggggcggcttcatctaacgg 27198874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 28040575 - 28040445
Alignment:
Q  147 aaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcct 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  28040575 aaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactaactccatctcgttgatagccctttcctcctaatggtggcct 28040476  T
Q  247 ttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||    
T  28040475 ttccatggggcggctccatctaacggatagc 28040445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 33055518 - 33055384
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  33055518 ctttaaataaagtatagaaatttaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatcttgttgatagccctctcctcccaatggtg 33055419  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  33055418 gcctttccatggggcggctccatctaacggatagc 33055384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 33062901 - 33062767
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  33062901 ctttaaataaagtatagaaatttaactttggtgaaaataatcaaatgggtgaatcgagaactagcttcatctcgttgatagccctctcctcccaatggtg 33062802  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  33062801 gcctttccatggggcggctccatctaacggatagc 33062767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 27527120 - 27526985
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatggg-tgaatcgagaactagctccatctcgttgatagccctctcctcctaatggt 241  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27527120 ctttaaataaagtatagaaatcaaactttggtgaaaataatcaaatggggtgaatcgagaactagcttcatctcgttgatagccctctcctcctaatggt 27527021  T
Q  242 ggcctttccatggggcggctccatctaacggatagc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  27527020 ggcctttccatggggcggctccatctaacggatagc 27526985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 22013849 - 22013715
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22013849 ctttaaataaagtatagaaatcctagtttagtgaaaataatcaaatgggtgaatcgagaactaactccatctcgttgatagccctctcctcctaatggtg 22013750  T
Q  243 gcctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  22013749 gcctttccatggggcggctccatctaacggatagc 22013715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 25478574 - 25478712
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25478574 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctccacctaatggtg 25478673  T
Q  243 gcctttc----catggggcggctccatctaacggatagc 277  Q
    |||||||    ||||||||||||||||||||||||||||    
T  25478674 gcctttccgtacatggggcggctccatctaacggatagc 25478712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 27683958 - 27683841
Alignment:
Q  160 aaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 259  Q
    ||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27683958 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 27683859  T
Q  260 ctccatctaacggatagc 277  Q
    ||||||||||||||||||    
T  27683858 ctccatctaacggatagc 27683841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 27691277 - 27691160
Alignment:
Q  160 aaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 259  Q
    ||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27691277 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggcgg 27691178  T
Q  260 ctccatctaacggatagc 277  Q
    ||||||||||||||||||    
T  27691177 ctccatctaacggatagc 27691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 17355336 - 17355227
Alignment:
Q  169 ttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatct 267  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  17355336 ttttttgaaaataatcaagtgggtgaatcgagaactagctccatctcgttgatagcccgctcctcctaatggtggcctttccataggggcggctccatct 17355237  T
Q  268 aacggatagc 277  Q
    ||||||||||    
T  17355236 aacggatagc 17355227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 13142491 - 13142596
Alignment:
Q  173 gtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttcc-atggggcggctccatctaacg 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  13142491 gtgaaaataatcaaatgggtgaatcgagaactagctctatctcgttgatagccctctcctcctaatggtggtctttccaatggggcggctccatctaacg 13142590  T
Q  272 gatagc 277  Q
    | ||||    
T  13142591 ggtagc 13142596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 9814661 - 9814558
Alignment:
Q  176 aaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9814661 aaaataatcaaaataggtgaattgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccataggggcggctccatctaacgga 9814562  T
Q  274 tagc 277  Q
    ||||    
T  9814561 tagc 9814558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 30130105 - 30129970
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggt 241  Q
    ||||||| ||| |||||||||||   ||| || |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  30130105 ctttaaagaaaatatagaaatctccatttagtaaaaataatcaaaatgggtgaatcgagaactagctccatctcgctgatag-cctctcctcctaatggt 30130007  T
Q  242 ggcctttccat-ggggcggctccatctaacggatagc 277  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  30130006 ggcctttccataggggtggctccatctaacggatagc 30129970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 6952126 - 6952023
Alignment:
Q  175 gaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||| ||||| ||||||||    
T  6952126 gaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcataatgatggcctttccatagaggcgactccagctaacgga 6952027  T
Q  274 tagc 277  Q
    ||||    
T  6952026 tagc 6952023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 15970732 - 15970823
Alignment:
Q  185 aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccatggggc-ggctccatctaacggata 275  Q
    |||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||    
T  15970732 aaatgggtgaatcgagaactagattcttctcgttgatagccctctcctcctaatggtggtctttccatagggctggctccatctaaccgata 15970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 17355171 - 17355109
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgga 273  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17355171 tctcattgatagccctctcctcctaatggtggcctttccattggggcggctccatctaacgga 17355109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 9814502 - 9814444
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9814502 tctcattgatagccctctcctcctaatggtggcctttccataggggcggctccatctaa 9814444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 9814826 - 9814749
Alignment:
Q  173 gtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttc 249  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||    
T  9814826 gtgaaaataatcaaaataggtgaatcgagaactagctccatctcgttgatagctctttcctactaagagtggcctttc 9814749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 27526929 - 27526868
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  27526929 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacgg 27526868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 27650921 - 27650850
Alignment:
Q  151 aaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgat 221  Q
    |||||||| ||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  27650921 aaagtataaaaatccaactttagtgaaaataatcaaaatggatgaatcgagaactagctccatatcgttgat 27650850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 22013659 - 22013601
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  22013659 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 22013601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 27683780 - 27683727
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27683780 ttgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 27683727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 27691101 - 27691048
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27691101 ttgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 27691048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 25478768 - 25478829
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| ||||||||| |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  25478768 tctcattgatagccatctcctcctaatgaaggcctttccataggggcggctccatctaacgg 25478829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 33055328 - 33055267
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| ||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||    
T  33055328 tctcattgatagccctttcctcctaatggcggcccttccataggggcggctccatctaacgg 33055267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 33062711 - 33062650
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| ||||||||| |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  33062711 tctcattgatagccttctcctcctaatgacggcctttccataggggcggctccatctaacgg 33062650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 13142651 - 13142709
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| ||||||| | |||||||||||||| ||||||||||| |||||||||||||||||    
T  13142651 tctcattgatagtcgtctcctcctaatggcggcctttccataggggcggctccatctaa 13142709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 27650741 - 27650678
Alignment:
Q  210 catctcgttgatagccctctcctcctaatgg---tggcctttccat-ggggcggctccatctaa 269  Q
    |||||| ||||||||||||||||||||||||   |||||||||||| ||||||||||| |||||    
T  27650741 catctcattgatagccctctcctcctaatggtactggcctttccataggggcggctccgtctaa 27650678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 28040377 - 28040331
Alignment:
Q  223 gccctctcctcctaatggtggcctttccat-ggggcggctccatcta 268  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  28040377 gccctcccctcctaatggcggcctttccataggggcggctccatcta 28040331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 3532 - 3401
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3532 ctttaaataaagtatagaaatctaactttggtgaaaataatcaaacgg-tgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 3434  T
Q  243 gcctttccatggggcggctccatctaacggata 275  Q
    |||||||||||||||||||||||||||||||||    
T  3433 gcctttccatggggcggctccatctaacggata 3401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 3343 - 3282
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3343 tctcattgatagccctctcctcctaatggtggcctttccataggggcggctccatctaacgg 3282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 28803437 - 28803305
Alignment:
Q  145 ttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggc 244  Q
    |||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28803437 ttaaataaagtatagaaattcaactttaatgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggc 28803338  T
Q  245 ctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||| ||||||    
T  28803337 ctttccatggggcggctccatctaacagatagc 28803305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 44060341 - 44060477
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggt 241  Q
    ||||||| ||| |||||||| ||   ||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44060341 ctttaaagaaaatatagaaaactccatttagtgaaaataaacaaaataggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggt 44060440  T
Q  242 ggcctttccat-ggggcggctccatctaacggatagc 277  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44060441 ggcctttccataggggcggctccatctaacggatagc 44060477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 36264587 - 36264680
Alignment:
Q  185 aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  36264587 aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtgacctttccataggagcggctccatctaacggatagc 36264680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 36264736 - 36264835
Alignment:
Q  176 aaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacggat 274  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||    
T  36264736 aaaataatcaaatgggtgaatcgagaactaactccatctcgttgatagccctctcctcctaatggtgacc-ttccataggggcggctccatctaatggat 36264834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 44060533 - 44060591
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  44060533 tctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 44060591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 28803249 - 28803188
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  28803249 tctcattgatagccctctcctcctaatggcggcttttccataggggcggctccatctaacgg 28803188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 36264893 - 36264954
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 272  Q
    |||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  36264893 tctcattgatagcactctcctcctaatggcggcctttccataggggcggctctatctaacgg 36264954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 22010914 - 22010864
Alignment:
Q  220 atagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| |||||||||| | ||||||||||||||| |||||||||||||||||    
T  22010914 ataggcctctcctccaactggtggcctttccataggggcggctccatctaa 22010864  T

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Target: scaffold0438 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 7970 - 8105
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    ||||||||||||||||||| || |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7970 ctttaaataaagtatagaactccaacttcagtgaaaataatcaaatggttgaatcgagaactagctccatctcgttgatagccctctcctccaaatggtg 8069  T
Q  243 gcctttccat-ggggcggctccatctaacggatagc 277  Q
    |||||||||| |||||||||||||||||||||||||    
T  8070 gcctttccataggggcggctccatctaacggatagc 8105  T

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Target: scaffold0438; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 10953 - 11086
Alignment:
Q  143 ctttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtg 242  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  10953 ctttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagcc--ctcctccaaatggtg 11050  T
Q  243 gcctttccat-ggggcggctccatctaacggatagc 277  Q
    |||||||||| |||||||||||||||||||||||||    
T  11051 gcctttccataggggcggctccatctaacggatagc 11086  T

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Target: scaffold0438; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 8160 - 8224
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  8160 catctcattgatagccctctcctcctaatggcggcctttccataggggcggctccgtctaacgga 8224  T

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Target: scaffold0438; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 11141 - 11205
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  11141 catctcattgatagccctttcctcctaatggcggcctttccataggggcggctccatttaacgga 11205  T

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Target: scaffold0713 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 664 - 533
Alignment:
Q  145 ttaaataaagtatagaaatctaacttttgtgaaaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggc 244  Q
    ||||| |||||||| ||||| || |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  664 ttaaagaaagtata-aaatccaatttttttgaaaataatcaagtgggtgaatcgagaactagctccatctcattgatagccctctcctcctaatggtggc 566  T
Q  245 ctttccatggggcggctccatctaacggatagc 277  Q
    |||||||||||||||||||||||||||||||||    
T  565 ctttccatggggcggctccatctaacggatagc 533  T

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Target: scaffold0713; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 479 - 419
Alignment:
Q  210 catctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  479 catctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaa 419  T

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Target: scaffold0007 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 60334 - 60228
Alignment:
Q  173 gtgaaaataatcaaat-gggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaac 270  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  60334 gtgaaaacaatcaaaacgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccataggggcggctccatctaac 60235  T
Q  271 ggatagc 277  Q
     ||||||    
T  60234 agatagc 60228  T

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Target: scaffold0007; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 60484 - 60391
Alignment:
Q  185 aaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacggatagc 277  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  60484 aaatgggtgaatcaagaactagctccatctcgttgatagccctctcctcctaaaggtggccttcccataagggcggctccatctaacggatagc 60391  T

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Target: scaffold0007; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 60171 - 60113
Alignment:
Q  212 tctcgttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaa 269  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  60171 tctcattgatagccctctcctcctaatggtggccttcccataggggcggctccatctaa 60113  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 413410 - 413467
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  413410 ttgatagccctctcctcctaatggcggtctttccataggggcggctccatctaacgga 413467  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 407241 - 407292
Alignment:
Q  173 gtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatag 223  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  407241 gtgaaaataattaaaatgggtgaatcgagaacttgctccatctcgttgatag 407292  T

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Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 424792 - 424849
Alignment:
Q  217 ttgatagccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgga 273  Q
    |||||||| |||||| |||||||| ||||||||||| |||||||||||||||| ||||    
T  424792 ttgatagctctctccacctaatggcggcctttccataggggcggctccatctatcgga 424849  T

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Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 424624 - 424675
Alignment:
Q  173 gtgaaaataatcaaa-tgggtgaatcgagaactagctccatctcgttgatag 223  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||||||||||    
T  424624 gtgaaaataaccaaaatgggtgaatcgtgaacttgctccatctcgttgatag 424675  T

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Target: scaffold0002; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 413255 - 413293
Alignment:
Q  185 aaatgggtgaatcgagaactagctccatctcgttgatag 223  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  413255 aaatgagtgaatcgagaactagctccatctcattgatag 413293  T

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