View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_12 (Length: 688)
Name: NF12055_high_12
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 123 - 679
Target Start/End: Complemental strand, 6609050 - 6608488
Alignment:
| Q |
123 |
ctagggtgattatagagcataatcatggttgcactattgcacctgcactagaataacatcttgacatatatacttataactggacaaactt-agagctta |
221 |
Q |
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| T |
6609050 |
ctagggtgattatagagcataatcatggttgcactattgcacctgcactagaataacatcttgacatatatacttataactggacaaactttagagctta |
6608951 |
T |
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| Q |
222 |
ttatcgattctgattttcaatgttaggatggaaacaaatgaactcttacgtgtgactttcattcaaagctgccgaaagcatagttgcaattttgtttccc |
321 |
Q |
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| T |
6608950 |
ttatcgattctgattttcaatgttaggatggaaacaaatgaactcttacgtgtgactttcattcaaagctgccgaaagcatagttgcaattttgtttccc |
6608851 |
T |
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| Q |
322 |
ggagcttcttgcaagccaacagctagaagatcgaaatctcggttgctactaaccatttctgctaaatcttcaaacgaaacctgattaattcatgccaaat |
421 |
Q |
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| T |
6608850 |
ggagcttcttgcaagccaacagctagaagatcgaaatctcggttgctaccaaccatttctgctaaatcttcaaacgaaacctgattaattcacgccaaat |
6608751 |
T |
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| Q |
422 |
taaataataatgttgaattaaactttaaaacaacaactaaatagaaataaaattttgtcag-----caaatacgacagttaaaaagaaacggagggagta |
516 |
Q |
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| T |
6608750 |
taaataataatgttgaattaaactttgaaacaacaactaaatagaaataaaattttgtcagcaaagcaaatacgacagttaaaaagaaacggagggagta |
6608651 |
T |
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| Q |
517 |
gtcaagtgactctagtacctgaccattcatattccaagtaactatggagatggatagatttgaagtggtggagaagttacaagtgttatccacatccaca |
616 |
Q |
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| T |
6608650 |
gtcaagtgactctagtacctgaccattcatattccaagtaaatatggagatgcatagatttgaagtggtggagaagttacaagtgttatccacatccacg |
6608551 |
T |
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| Q |
617 |
gttcttatcccaatctgagacggtgaagtttgatgatgaacaaaacccgttggcctttgcttc |
679 |
Q |
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| T |
6608550 |
gttcttatcccaatctgagacggtgaagtttgatgatgaacaaaacccattggccttttcttc |
6608488 |
T |
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