View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_14 (Length: 633)
Name: NF12055_high_14
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Complemental strand, 26786070 - 26785569
Alignment:
| Q |
8 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786070 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26785971 |
T |
|
| Q |
108 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785970 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
26785871 |
T |
|
| Q |
208 |
aggctcgctggaagtttggtaatttctctttttcccttaattcttctagaatcgcattaacctataagttgcggcatagcatatagcggtgatatattta |
307 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785870 |
aggctcgctggaagtttggtaattactctttttccct-aattcttctagaatcgcattaacctataagttgcggcatagcatatagcggtgatatattta |
26785772 |
T |
|
| Q |
308 |
gtgcatgcttgaattaacattaattgtgattttgttgaagttttaaaatatatttttctaaaacatggtgacaaacgtgattcggacaaatttgccatga |
407 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785771 |
gtgcatgcttgaattaacattaattctgattttgttgaagttttaaaagatatttttctaaaacatggtgacaaacgtgattcggacaaatttgccatga |
26785672 |
T |
|
| Q |
408 |
acacaaaattacatatagctacttaaaagtgaaacaataaaatctacaccgcagtgtagattttatttgttttgaaaatgttagattttttatctcatat |
507 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26785671 |
acacaaaattacacatagctacttaaaagtgaaacaataaaatctacactgcggtgtagattttatttgttttgaaaatgttagattttgtatctcatat |
26785572 |
T |
|
| Q |
508 |
ttg |
510 |
Q |
| |
|
||| |
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|
| T |
26785571 |
ttg |
26785569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 26822711 - 26822481
Alignment:
| Q |
8 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822711 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26822612 |
T |
|
| Q |
108 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
26822611 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgactttctccgccgaacgatcccttttcttgtcaataatcctgaaattggtctcgttc |
26822512 |
T |
|
| Q |
208 |
aggctcgctggaagtttggtaatttctcttt |
238 |
Q |
| |
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|||||||||||||||||||||||| |||||| |
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|
| T |
26822511 |
aggctcgctggaagtttggtaattactcttt |
26822481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 26791810 - 26791590
Alignment:
| Q |
8 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791810 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26791711 |
T |
|
| Q |
108 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
26791710 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttc |
26791611 |
T |
|
| Q |
208 |
aggctcgctggaagtttggta |
228 |
Q |
| |
|
| ||||||||||||||||||| |
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| T |
26791610 |
aagctcgctggaagtttggta |
26791590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 26832789 - 26832563
Alignment:
| Q |
7 |
gcaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatg |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||| |||||| |
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| T |
26832789 |
gcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatg |
26832690 |
T |
|
| Q |
107 |
tgaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgtt |
206 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||| ||||||||||| || || | |||||| ||||||||||| ||||||||||| |||||||| ||| |
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| T |
26832689 |
tgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgtt |
26832590 |
T |
|
| Q |
207 |
caggctcgctggaagtttggtaatttc |
233 |
Q |
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||||||||||||||||||||||||||| |
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| T |
26832589 |
caggctcgctggaagtttggtaatttc |
26832563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 41546228 - 41546355
Alignment:
| Q |
18 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
117 |
Q |
| |
|
|||||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| ||||||| |
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| T |
41546228 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
41546327 |
T |
|
| Q |
118 |
ccatctttgatgctgattttcaacctga |
145 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
41546328 |
ccatctttgatgctgattttcaacctga |
41546355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Original strand, 26785605 - 26785636
Alignment:
| Q |
443 |
aataaaatctacaccgcagtgtagattttatt |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
26785605 |
aataaaatctacaccgcagtgtagattttatt |
26785636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 41917441 - 41917588
Alignment:
| Q |
7 |
gcaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatg |
106 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||| |||| || |||||||| ||||| |||| ||||| |
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|
| T |
41917441 |
gcaaaggagtgaatataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaatg |
41917540 |
T |
|
| Q |
107 |
tgaatatgttgccatctttgatgctgattttcaacctgaacctgattt |
154 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||| || |||||||| |
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|
| T |
41917541 |
tgatcatgttgcaatatttgatgctgattttcaaccagagcctgattt |
41917588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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