View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_high_16 (Length: 583)

Name: NF12055_high_16
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_high_16
NF12055_high_16
[»] chr4 (17 HSPs)
chr4 (319-569)||(5050447-5050696)
chr4 (14-147)||(5049953-5050086)
chr4 (190-255)||(5050129-5050194)
chr4 (319-411)||(3067600-3067692)
chr4 (14-138)||(5060822-5060949)
chr4 (319-446)||(45891817-45891945)
chr4 (320-406)||(52803243-52803329)
chr4 (319-415)||(4059100-4059196)
chr4 (319-438)||(14295046-14295165)
chr4 (319-438)||(14311095-14311214)
chr4 (319-438)||(14313296-14313415)
chr4 (320-417)||(18371163-18371260)
chr4 (320-415)||(31040304-31040400)
chr4 (385-442)||(37861280-37861337)
chr4 (319-388)||(43967986-43968055)
chr4 (319-371)||(36622116-36622168)
chr4 (385-442)||(46963835-46963892)
[»] scaffold0192 (1 HSPs)
scaffold0192 (319-446)||(13412-13539)
[»] chr3 (14 HSPs)
chr3 (319-446)||(41242138-41242265)
chr3 (319-417)||(16053084-16053182)
chr3 (327-417)||(16037596-16037686)
chr3 (327-417)||(16041152-16041242)
chr3 (320-445)||(17517840-17517965)
chr3 (326-439)||(11076905-11077018)
chr3 (319-417)||(31229711-31229809)
chr3 (353-417)||(28389449-28389513)
chr3 (321-431)||(39933360-39933469)
chr3 (320-371)||(37820821-37820872)
chr3 (320-373)||(50744744-50744797)
chr3 (391-442)||(4127359-4127410)
chr3 (391-442)||(50129155-50129206)
chr3 (391-442)||(51390374-51390425)
[»] chr6 (6 HSPs)
chr6 (320-446)||(12185666-12185792)
chr6 (320-446)||(9456168-9456294)
chr6 (319-417)||(3441206-3441304)
chr6 (319-417)||(25070374-25070472)
chr6 (320-442)||(10068206-10068326)
chr6 (319-369)||(10483607-10483657)
[»] chr5 (6 HSPs)
chr5 (321-442)||(35075870-35075991)
chr5 (319-417)||(39743465-39743563)
chr5 (321-428)||(7802007-7802113)
chr5 (386-443)||(5735964-5736021)
chr5 (319-393)||(31559096-31559170)
chr5 (385-446)||(31558176-31558237)
[»] chr8 (5 HSPs)
chr8 (319-416)||(25267019-25267116)
chr8 (336-433)||(39907977-39908074)
chr8 (320-412)||(2233861-2233953)
chr8 (343-415)||(32162808-32162880)
chr8 (383-439)||(11190545-11190601)
[»] chr7 (7 HSPs)
chr7 (320-405)||(33902215-33902300)
chr7 (320-446)||(24211286-24211411)
chr7 (321-371)||(46603750-46603800)
chr7 (320-406)||(9603492-9603578)
chr7 (320-406)||(9831063-9831149)
chr7 (320-368)||(40291213-40291261)
chr7 (320-368)||(45996496-45996544)
[»] scaffold0402 (1 HSPs)
scaffold0402 (319-445)||(2999-3123)
[»] chr1 (8 HSPs)
chr1 (319-445)||(19339936-19340060)
chr1 (319-416)||(46298562-46298659)
chr1 (320-404)||(49423364-49423448)
chr1 (326-453)||(31501006-31501133)
chr1 (320-423)||(23392696-23392800)
chr1 (320-417)||(25808472-25808569)
chr1 (391-442)||(34967742-34967793)
chr1 (383-440)||(47449243-47449300)
[»] chr2 (8 HSPs)
chr2 (320-446)||(11152212-11152344)
chr2 (320-410)||(2126179-2126269)
chr2 (326-442)||(5578025-5578141)
chr2 (319-367)||(15081331-15081379)
chr2 (405-442)||(4762065-4762102)
chr2 (393-442)||(11252647-11252696)
chr2 (378-442)||(2674359-2674423)
chr2 (319-415)||(11617277-11617373)
[»] scaffold1786 (1 HSPs)
scaffold1786 (330-423)||(398-491)
[»] scaffold0007 (1 HSPs)
scaffold0007 (323-442)||(176183-176302)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 319 - 569
Target Start/End: Original strand, 5050447 - 5050696
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||     
T  5050447 cattttattgaaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgaggcataatttatgatttaattctatttttagattcttaactt 5050546  T
Q  419 gtgtcataagggcacaagttaacactacttcttttgattttaattttttaatgtgcacctcattcttacaatggtatctgatcaggggcggatctaaact 518  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5050547 gtgccataagggcacaagttaacactact-cttttgattttaatttttgaatgtgcacatcattcttacaatggtatctgatcaggggcggatctaaact 5050645  T
Q  519 caaaatatcggtgacttacagagatgagaggaaagtgtgtcggtagtggtc 569  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5050646 caaaatattggtgacttacagagatgagaggaaagtgtgtcggtagtggtc 5050696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 5049953 - 5050086
Alignment:
Q  14 agatggtgatgttgggtgaaatacaaaattttgttattgatttttagtgatttgcaaaagatgatgagaatagagagattgtgatgaattcacatgattt 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049953 agatggtgatgttgggtgaaatacaaaattttgttattgaattttagtgatttgcaaaagatgatgagaatagagagattgtgatgaattcacatgattt 5050052  T
Q  114 tgaacgtggaaaccaaacagaggatgggtttgtt 147  Q
    ||||||||||||||||||| ||||||||||||||    
T  5050053 tgaacgtggaaaccaaacaaaggatgggtttgtt 5050086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 5050129 - 5050194
Alignment:
Q  190 tgaaggtaataagggaacttgcatggtcagatgaaataaatgaagtgggtggggaaaaacaatggg 255  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5050129 tgaaggtaataagggaacttgcatgatcagatgaaataaatgaagtgggtggggaaaaacaatggg 5050194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 319 - 411
Target Start/End: Complemental strand, 3067692 - 3067600
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattc 411  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||  ||||||||||||    
T  3067692 cattttgttggaaattgtgcattcaatattttagaaatttaaaatcttatcttttcaagaaataatttatgatttaatttcatttttagattc 3067600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 5060822 - 5060949
Alignment:
Q  14 agatggtgatgttggg-tgaaatacaaaattttgt-tattgatttttagtgatttgcaaaagatgatgagaatagagagattgtgatgaatt---cacat 108  Q
    |||||||||||||||| ||||||| |||| ||||| | ||||||||||||||||||||||||||| || ||||  |||||||||||||||||    |||     
T  5060822 agatggtgatgttggggtgaaatagaaaagtttgtgttttgatttttagtgatttgcaaaagatggtgggaat--agagattgtgatgaatttacaacaa 5060919  T
Q  109 gattttgaacgtggaaaccaaacagaggat 138  Q
    || ||||||||||||||||||||| |||||    
T  5060920 gagtttgaacgtggaaaccaaacaaaggat 5060949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 45891817 - 45891945
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttga-gatataatttatgatttaattctatttttagattcttaact 417  Q
    |||||| ||||| |||||||||| ||| |  || |||||||||||||||| || |  | || | || |||||||||||||||||||||||||||||||||    
T  45891817 cattttgttggagattgtgcattcaatgtcctaaaaatttaaaatcttattttttcaaagacaaaaattatgatttaattctatttttagattcttaact 45891916  T
Q  418 agtgtcataagggcacaagttaacactac 446  Q
     ||| | | ||||||||||||||||||||    
T  45891917 tgtgcccttagggcacaagttaacactac 45891945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 52803329 - 52803243
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctattttta 406  Q
    |||||||| ||||| |||| ||| |||||||||||||||||||||||||| | || ||||| |||||||| ||||||| ||||||||    
T  52803329 attttattagaaatcgtgcgtttcatattttagaaatttaaaatcttatccttttaagataaaatttatgttttaattttattttta 52803243  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 4059196 - 4059100
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaa 415  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| |  ||| | |||||||| ||||||| |||||| || |||||||    
T  4059196 cattttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaattttattttgagtttcttaa 4059100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 319 - 438
Target Start/End: Original strand, 14295046 - 14295165
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||||| ||||||||||  ||| |||||||| |||||| |||||||||||| || ||| | |||||||| ||||||| | ||||||| |||||||||     
T  14295046 cattttataggaaattgtgattttcatattttaaaaatttcaaatcttatctttttaagacaaaatttatgttttaattttgtttttagcttcttaactt 14295145  T
Q  419 gtgtcataagggcacaagtt 438  Q
    | ||| |||  |||||||||    
T  14295146 gagtcttaaatgcacaagtt 14295165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 319 - 438
Target Start/End: Original strand, 14311095 - 14311214
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||||| ||||||||||  ||| |||||||| |||||| |||||||||||| || ||| | |||||||| ||||||| | ||||||| |||||||||     
T  14311095 cattttataggaaattgtgattttcatattttaaaaatttcaaatcttatctttttaagacaaaatttatgttttaattttgtttttagcttcttaactt 14311194  T
Q  419 gtgtcataagggcacaagtt 438  Q
    | ||| |||  |||||||||    
T  14311195 gagtcttaaatgcacaagtt 14311214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 319 - 438
Target Start/End: Original strand, 14313296 - 14313415
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||||| ||||||||||  ||| |||||||| |||||| |||||||||||| || ||| | |||||||| ||||||| | ||||||| |||||||||     
T  14313296 cattttataggaaattgtgattttcatattttaaaaatttcaaatcttatctttttaagacaaaatttatgttttaattttgtttttagcttcttaactt 14313395  T
Q  419 gtgtcataagggcacaagtt 438  Q
    | ||| |||  |||||||||    
T  14313396 gagtcttaaatgcacaagtt 14313415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 18371163 - 18371260
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||||||||| || || ||||| |||||||  ||||||||  ||||||  |||||||||    
T  18371163 attttataggaaattgtgcattctatattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttttttacgttcttaact 18371260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 415
Target Start/End: Original strand, 31040304 - 31040400
Alignment:
Q  320 attttattggaaattgtgcat-ttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaa 415  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||  | | ||| |||||||  |||||||  |||||||| |||||||    
T  31040304 attttattggaaattatgcatattaatgttttagaaatttaaaatcttatctttataaaataaaatttatattttaatttcatttttagtttcttaa 31040400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 37861280 - 37861337
Alignment:
Q  385 ttatgatttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    ||||| ||||||||| ||||||||| ||||||| ||| | ||||||||||||||||||    
T  37861280 ttatgttttaattctttttttagatccttaacttgtgccttaagggcacaagttaaca 37861337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 43968055 - 43967986
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttat 388  Q
    |||||| ||| ||||||||||||||||||| || |||||| |||||||||||| |  ||| |||||||||    
T  43968055 cattttgttgaaaattgtgcatttaatattctaaaaattttaaatcttatcttttcaagacataatttat 43967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 36622168 - 36622116
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatctt 371  Q
    |||||| |||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  36622168 catttttttggaaattgtgcattcaatatattaaaaatttaaaattttatctt 36622116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 46963892 - 46963835
Alignment:
Q  385 ttatgatttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    ||||| ||||||||| ||||||||| ||||||| ||| | ||||| ||||||||||||    
T  46963892 ttatgttttaattctttttttagatccttaacttgtgccttaaggccacaagttaaca 46963835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 13412 - 13539
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||| |  ||| ||||||||||||||||||  ||||||||||||||||||     
T  13412 cattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattgcatttttagattcttaactt 13511  T
Q  419 gtgtcataagggcacaagttaacactac 446  Q
    ||| | | ||||||||||||| ||||||    
T  13512 gtgcccttagggcacaagttagcactac 13539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 319 - 446
Target Start/End: Complemental strand, 41242265 - 41242138
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |   || ||||||||||||||||||||||||||||||| ||||||     
T  41242265 cattttgttggaaattgtgcatttaatattttagaaatttgaaatcttatcttttcaggacataatttatgatttaattctatttttagatttttaactt 41242166  T
Q  419 gtgtcataagggcacaagttaacactac 446  Q
    ||| | | | ||||||| ||||||||||    
T  41242165 gtgcccttacggcacaaattaacactac 41242138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 319 - 417
Target Start/End: Original strand, 16053084 - 16053182
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||| |  ||| ||||||||||||||||||| | ||||||||||||||||    
T  16053084 cattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccaattttagattcttaact 16053182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 16037596 - 16037686
Alignment:
Q  327 tggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| |  ||| ||||||| ||||||||||| ||||||||||||||||||    
T  16037596 tggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttgtgatttaattccatttttagattcttaact 16037686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 16041152 - 16041242
Alignment:
Q  327 tggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| |  ||| ||||||||||||||||||| |||||||||||| |||||    
T  16041152 tggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccatttttagattcataact 16041242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 320 - 445
Target Start/End: Complemental strand, 17517965 - 17517840
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactag 419  Q
    ||||| || ||||||||||||| |||||| || ||||||||| ||||||||| |  ||||||||||||||||||||||  | |||||||||||||||| |    
T  17517965 attttgttagaaattgtgcattcaatattctaaaaatttaaattcttatcttttcaagatataatttatgatttaatttcaattttagattcttaacttg 17517866  T
Q  420 tgtcataagggcacaagttaacacta 445  Q
    |||| | ||||||||| | |||||||    
T  17517865 tgtccttagggcacaaatcaacacta 17517840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 11077018 - 11076905
Alignment:
Q  326 ttggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagtgtcat 425  Q
    |||||||||||||| | |||||||||||||||||||||||||| || |  ||| | |||||||| |||||||| |||||||||||||||||| ||| | |    
T  11077018 ttggaaattgtgcaatcaatattttagaaatttaaaatcttatattttcaagacaaaatttatgttttaattccatttttagattcttaacttgtgcctt 11076919  T
Q  426 aagggcacaagtta 439  Q
    || | |||||||||    
T  11076918 aacgacacaagtta 11076905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 417
Target Start/End: Complemental strand, 31229809 - 31229711
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    |||||||||||||||||| ||||  || ||||||||||||||||||||||  | |  |||||||||||||| |||| |||||||||||  |||||||||    
T  31229809 cattttattggaaattgtacattctatgttttagaaatttaaaatcttatgatttcaagatataatttatgttttacttctatttttaacttcttaact 31229711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 28389449 - 28389513
Alignment:
Q  353 aaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    ||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||| |||||    
T  28389449 aaatttaaaatattatcttttcaagatataatttatgatttaattctatttttagattcctaact 28389513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 321 - 431
Target Start/End: Original strand, 39933360 - 39933469
Alignment:
Q  321 ttttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagt 420  Q
    |||| ||| |||||||||||| |||||| || ||||||||| | ||||||| |  | | | |||||||||||||||||||||||||||||||||||| ||    
T  39933360 ttttgttgaaaattgtgcattcaatattctaaaaatttaaatt-ttatcttttcaaaacacaatttatgatttaattctatttttagattcttaacttgt 39933458  T
Q  421 gtcataagggc 431  Q
    | | |||||||    
T  39933459 gccgtaagggc 39933469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 37820872 - 37820821
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatctt 371  Q
    ||||||||||||||| ||||||  || |||||||||||||||||||||||||    
T  37820872 attttattggaaattatgcattccatgttttagaaatttaaaatcttatctt 37820821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 50744797 - 50744744
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttct 373  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||||| |||||    
T  50744797 attttattaaaaattgtgcatttcatattttaaaaatttaaaatcttaacttct 50744744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 4127410 - 4127359
Alignment:
Q  391 tttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    |||||||  |||||||| ||||||||| |||||||||||| |||||||||||    
T  4127410 tttaattacatttttagtttcttaacttgtgtcataagggtacaagttaaca 4127359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 50129155 - 50129206
Alignment:
Q  391 tttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    |||||||| |||||||| ||||||||| ||| | ||||||||||||||||||    
T  50129155 tttaattccatttttagtttcttaacttgtgccctaagggcacaagttaaca 50129206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 51390374 - 51390425
Alignment:
Q  391 tttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    |||||| ||||||||||||||||| || ||||| | ||||||||||||||||    
T  51390374 tttaatactatttttagattcttatcttgtgtccttagggcacaagttaaca 51390425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 320 - 446
Target Start/End: Complemental strand, 12185792 - 12185666
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactag 419  Q
    ||||| ||| |||||||||||| |||||| |||||||| ||||||||||||| |  ||| ||||||||||||||||||| ||||||| |||||||||| |    
T  12185792 attttgttgaaaattgtgcattcaatattctagaaattcaaaatcttatcttttcaagacataatttatgatttaattccatttttaaattcttaacttg 12185693  T
Q  420 tgtcataagggcacaagttaacactac 446  Q
    |||| |||  |||||||||||||||||    
T  12185692 tgtcttaaaagcacaagttaacactac 12185666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 446
Target Start/End: Complemental strand, 9456294 - 9456168
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactag 419  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||| || |  ||| ||||||||| ||||||||| ||||||| |||||||||| |    
T  9456294 attttgttggaaattgtgcattcaatagtctagaaatttaaaatcttatattttcaagacataatttataatttaattccatttttatattcttaacttg 9456195  T
Q  420 tgtcataagggcacaagttaacactac 446  Q
    ||   | ||||||||||||||||||||    
T  9456194 tgctcttagggcacaagttaacactac 9456168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 417
Target Start/End: Complemental strand, 3441304 - 3441206
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||||||| || |  ||||| |||||||| |||||||  |||||||  |||||||||    
T  3441304 cattttataggaaattgtgcatttcatattttagaactttaaaatcttatattttcaagataaaatttatgttttaatttcatttttaccttcttaact 3441206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 417
Target Start/End: Complemental strand, 25070472 - 25070374
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||||||||| |  ||| | ||||||||  ||| |||||||||||  |||||||||    
T  25070472 cattttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttatgtcttatttctatttttatcttcttaact 25070374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 442
Target Start/End: Original strand, 10068206 - 10068326
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactag 419  Q
    |||||||||||  |||||||||| || ||||||||||||||||| ||||  | |  ||| | |||||||| |||||||  |||||||  || |||||| |    
T  10068206 attttattgga--ttgtgcatttcatgttttagaaatttaaaattttattctgtcaagacaaaatttatgttttaatttcatttttaccttattaacttg 10068303  T
Q  420 tgtcataagggcacaagttaaca 442  Q
    |||| ||||||||||||||||||    
T  10068304 tgtcctaagggcacaagttaaca 10068326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 10483657 - 10483607
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatc 369  Q
    |||||||||||| |||||| |||  ||||||||||||||||||||||||||    
T  10483657 cattttattggatattgtgtattacatattttagaaatttaaaatcttatc 10483607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 35075870 - 35075991
Alignment:
Q  321 ttttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagt 420  Q
    |||| ||| |||||||||||| |||||| |||||||||||||||||||||| |  ||| | || |||||||||||||||||||||| ||||||||||  |    
T  35075870 ttttgttgaaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacaaaaattatgatttaattctatttttatattcttaacttat 35075969  T
Q  421 gtcataagggcacaagttaaca 442  Q
    ||| |||||||||| |||||||    
T  35075970 gtcttaagggcacacgttaaca 35075991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 417
Target Start/End: Original strand, 39743465 - 39743563
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    |||||||||| |||||||| |||| ||| ||||||||||||||||| ||| || || ||||| |||||||| || |||| |||||| |  |||||||||    
T  39743465 cattttattgaaaattgtgtattttatactttagaaatttaaaatcatatatttttaagataaaatttatgtttaaattttattttaaacttcttaact 39743563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 7802007 - 7802113
Alignment:
Q  321 ttttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagt 420  Q
    |||||||| ||||||| ||||| |||||||||||||||||||| ||||||| || ||| | |||||    |||||||| |||||||  ||||||||| ||    
T  7802007 ttttattgaaaattgttcatttcatattttagaaatttaaaattttatctt-ttaagacaaaatttgcattttaattccatttttaccttcttaacttgt 7802105  T
Q  421 gtcataag 428  Q
    ||| ||||    
T  7802106 gtcttaag 7802113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 443
Target Start/End: Complemental strand, 5736021 - 5735964
Alignment:
Q  386 tatgatttaattctatttttagattcttaactagtgtcataagggcacaagttaacac 443  Q
    |||| ||||||||| ||||||||||||||||| ||| | | |||||||||||||||||    
T  5736021 tatgttttaattctttttttagattcttaacttgtggccttagggcacaagttaacac 5735964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 31559170 - 31559096
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgattt 393  Q
    |||||| ||||| |||||||||||| |||||||| |||||||||| |||| || |  ||| ||||||||| ||||    
T  31559170 cattttgttggacattgtgcatttagtattttagcaatttaaaattttatgttttcaagacataatttattattt 31559096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 31558237 - 31558176
Alignment:
Q  385 ttatgatttaattctatttttagattcttaactagtgtcataagggcacaagttaacactac 446  Q
    |||| ||||||||  ||||| |||||||||||| ||||| |||| ||| |||||||||||||    
T  31558237 ttattatttaatttcattttaagattcttaacttgtgtcctaagtgcataagttaacactac 31558176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 25267116 - 25267019
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaac 416  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||||||| | |  ||| ||||||||||||||||||| |||||||||||||||||    
T  25267116 cattttgttggaaattgtgcattcgatattatagaaatttaaaatcttatcatttcaagacataatttatgatttaattccatttttagattcttaac 25267019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 433
Target Start/End: Original strand, 39907977 - 39908074
Alignment:
Q  336 tgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagtgtcataagggcac 433  Q
    ||||||| |||||||||||||||||||| ||||||| || | ||| |||||||| |||||||  |||||||| || |||||| | ||| |||||||||    
T  39907977 tgcatttcatattttagaaatttaaaatgttatctttttaaaataaaatttatgttttaatttcatttttagctttttaacttgagtcttaagggcac 39908074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 412
Target Start/End: Complemental strand, 2233953 - 2233861
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattct 412  Q
    ||||| ||||||||| |||||| |||||| || ||||||||||| ||||||| |  | | | ||||||||||||||||||||||||| |||||    
T  2233953 attttgttggaaattatgcattcaatattctaaaaatttaaaattttatcttttcaaaacaaaatttatgatttaattctatttttatattct 2233861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 32162808 - 32162880
Alignment:
Q  343 aatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaa 415  Q
    |||||||||||||| ||||||||||| || |  | ||| ||||||||||||||||| ||||||||||||||||    
T  32162808 aatattttagaaatgtaaaatcttatattttcaaaataaaatttatgatttaattccatttttagattcttaa 32162880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 11190601 - 11190545
Alignment:
Q  383 atttatgatttaattctatttttagattcttaactagtgtcataagggcacaagtta 439  Q
    ||||||| ||||||||||||||||| || |||||| |||||||||| ||||||||||    
T  11190601 atttatgttttaattctatttttagcttattaactcgtgtcataagagcacaagtta 11190545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 33902300 - 33902215
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctattttt 405  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |  ||| ||||||||| ||||||||| ||||||    
T  33902300 attttattgaaaattatgcatttaatattttagaaatttaaaatcttatcttttcaagacataatttataatttaattccattttt 33902215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 320 - 446
Target Start/End: Complemental strand, 24211411 - 24211286
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactag 419  Q
    ||||| |||||||||||| ||| ||||||  |||||||  |||||| ||||| |  | | |||||||||||||||||||||||||||||||||||||| |    
T  24211411 attttgttggaaattgtgtattcaatattcaagaaattggaaatctaatcttttcaaaacataatttatgatttaattctatttttagattcttaacttg 24211312  T
Q  420 tgtcataagggcacaagttaacactac 446  Q
    |||| | |  |||||||||||||||||    
T  24211311 tgtcctta-cgcacaagttaacactac 24211286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 46603750 - 46603800
Alignment:
Q  321 ttttattggaaattgtgcatttaatattttagaaatttaaaatcttatctt 371  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  46603750 ttttattggaaattgtgcatttcatgttttagaaatttaaaatcttatctt 46603800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 9603492 - 9603578
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctattttta 406  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| |  | | |  ||||||| ||||||||||||||||    
T  9603492 attttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttta 9603578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 9831063 - 9831149
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctattttta 406  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| |  | | |  ||||||| ||||||||||||||||    
T  9831063 attttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttta 9831149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 40291213 - 40291261
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttat 368  Q
    ||||||||||||||||||||||| ||| |||| || |||||||| ||||    
T  40291213 attttattggaaattgtgcatttgatactttaaaattttaaaatattat 40291261  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 45996496 - 45996544
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttat 368  Q
    ||||||||| |||||||| |||||||||| || ||||||||||| ||||    
T  45996496 attttattgtaaattgtgtatttaatattctaaaaatttaaaattttat 45996544  T

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Target: scaffold0402 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 445
Target Start/End: Original strand, 2999 - 3123
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||| |||||||||||||||| |||||||||||| |||||| ||||||||| |  ||| | ||  | || |||||||| |||| |||||||||||||     
T  2999 cattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagacaaaa--tctgttttaattccatttatagattcttaactt 3096  T
Q  419 gtgtcataagggcacaagttaacacta 445  Q
    ||| ||| |||||||||||||||||||    
T  3097 gtgacattagggcacaagttaacacta 3123  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 445
Target Start/End: Original strand, 19339936 - 19340060
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    |||||| |||||||||||||||| |||||||||||| |||||| ||||||||| |  ||| | ||  | || |||||||| |||| |||||||||||||     
T  19339936 cattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagacaaaa--tctgttttaattccatttatagattcttaactt 19340033  T
Q  419 gtgtcataagggcacaagttaacacta 445  Q
    ||| ||| |||||||||||||||||||    
T  19340034 gtgacattagggcacaagttaacacta 19340060  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 416
Target Start/End: Original strand, 46298562 - 46298659
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaac 416  Q
    |||||| |||||||||||  ||| |||||| |||||||||||||||||||||| |  ||| |  ||||||| ||||||||||||||||||||||||||    
T  46298562 cattttgttggaaattgtatattcaatattatagaaatttaaaatcttatcttttcaagacaacatttatgttttaattctatttttagattcttaac 46298659  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 49423364 - 49423448
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttt 404  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||||||||| || |||||  ||||||| ||||||||||||||    
T  49423364 attttattgaaaattgtgcatttcatgttttaaaaatttaaaatcttatctttttaagataatatttatgttttaattctatttt 49423448  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 326 - 453
Target Start/End: Complemental strand, 31501133 - 31501006
Alignment:
Q  326 ttggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagtgtcat 425  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |  | | | || |||||||||||||  |||||||||||||||| | ||| | |    
T  31501133 ttggaaattgtgcatttaatgttctagaaatttaaaatcttatcttttcaaaacaaaaattatgatttaatttcatttttagattcttaatttgtgccct 31501034  T
Q  426 aagggcacaagttaacactacttctttt 453  Q
     |  ||| ||||||||||||||| ||||    
T  31501033 taaagcataagttaacactacttttttt 31501006  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 423
Target Start/End: Complemental strand, 23392800 - 23392696
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaa-tcttatcttcttgagatataatttatgatttaattctatttttagattcttaacta 418  Q
    ||||||||  |||||||||||||||||||||| || ||||||| |||||| || || ||||| |||||||  |||||||| ||||||||||| ||||||     
T  23392800 attttatttaaaattgtgcatttaatattttaaaattttaaaaatcttatatttttaagataaaatttattttttaattccatttttagatttttaactt 23392701  T
Q  419 gtgtc 423  Q
    |||||    
T  23392700 gtgtc 23392696  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 417
Target Start/End: Complemental strand, 25808569 - 25808472
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaact 417  Q
    ||||| || ||||||||| ||| ||||||||| ||||||||||| ||||||| |  ||| |  |||||||||||||||| |||||||||| |||||||    
T  25808569 attttgttagaaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaattccatttttagatccttaact 25808472  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 34967742 - 34967793
Alignment:
Q  391 tttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    ||||||||||||||||| ||||||||| ||| |  |||||||||||||||||    
T  34967742 tttaattctatttttagtttcttaacttgtgccccaagggcacaagttaaca 34967793  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 47449243 - 47449300
Alignment:
Q  383 atttatgatttaattctatttttagattcttaactagtgtcataagggcacaagttaa 440  Q
    |||||| | ||||||||||||| ||||||||| || ||| | ||||||||||||||||    
T  47449243 atttattagttaattctattttaagattcttatcttgtggcctaagggcacaagttaa 47449300  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 11152212 - 11152344
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatt------tatgatttaattctatttttagattctt 413  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||  ||| ||||||      ||| ||||||||  ||||||| ||||||    
T  11152212 attttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttctcaagacataatttactactataatttaatttcatttttaaattctt 11152311  T
Q  414 aactagtgtcataagggcacaagttaacactac 446  Q
    |||| || || ||| || |||||||||||||||    
T  11152312 aacttgtatcctaaaggtacaagttaacactac 11152344  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 2126269 - 2126179
Alignment:
Q  320 attttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagatt 410  Q
    ||||| |||||||||||||||| ||||||||| |||||||||| ||||| || |  ||| || |||||||||||||||| |||||||||||    
T  2126269 attttgttggaaattgtgcattcaatattttaaaaatttaaaaacttatattttcaagacatgatttatgatttaattccatttttagatt 2126179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 442
Target Start/End: Original strand, 5578025 - 5578141
Alignment:
Q  326 ttggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagtgtcat 425  Q
    |||||||||||||||||||||| ||  || ||||||| ||||| || |  | | | |||||||| ||||||||| ||||||||| ||||||| ||| | |    
T  5578025 ttggaaattgtgcatttaatatcttgaaagtttaaaaacttattttttcaatacaaaatttatgttttaattctctttttagatccttaacttgtgccct 5578124  T
Q  426 aagggcacaagttaaca 442  Q
     | | ||||||||||||    
T  5578125 tatgacacaagttaaca 5578141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 15081379 - 15081331
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatctta 367  Q
    |||||||||| ||||||||||||  || |||||||||||||||||||||    
T  15081379 cattttattgaaaattgtgcattctatcttttagaaatttaaaatctta 15081331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 4762102 - 4762065
Alignment:
Q  405 tagattcttaactagtgtcataagggcacaagttaaca 442  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  4762102 tagattcttaacttgtgtcttaagggcacaagttaaca 4762065  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 11252647 - 11252696
Alignment:
Q  393 taattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    ||||||||||||||||| |||| || ||| | ||||||||||||||||||    
T  11252647 taattctatttttagatccttatcttgtgccctaagggcacaagttaaca 11252696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 2674359 - 2674423
Alignment:
Q  378 atataatttatgatttaattctatttttagattcttaactagtgtcataagggcacaagttaaca 442  Q
    |||| ||||||  ||||||||||||||||| ||||||  | ||| |||||||| |||||||||||    
T  2674359 atatcatttattttttaattctatttttaggttcttatttcgtgccataagggtacaagttaaca 2674423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 11617373 - 11617277
Alignment:
Q  319 cattttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaa 415  Q
    ||||| |||| ||| ||||||||| || ||||| | |||||||||||||| ||  | ||||| |||||||| |||||||  |||||||  |||||||    
T  11617373 catttgattgaaaaatgtgcattttatgttttaaatatttaaaatcttatatttctaagataaaatttatgttttaatttcatttttactttcttaa 11617277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 330 - 423
Target Start/End: Original strand, 398 - 491
Alignment:
Q  330 aaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagtgtc 423  Q
    |||||||||||||||||||||| || ||||||||||||| || || ||||| |||||||  |||||||  ||||||||||| |||||| |||||    
T  398 aaattgtgcatttaatattttaaaattttaaaatcttatatttttaagataaaatttattttttaatttcatttttagatttttaacttgtgtc 491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 176302 - 176183
Alignment:
Q  323 ttattggaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgagatataatttatgatttaattctatttttagattcttaactagtgt 422  Q
    |||||| ||||||||||||| || |||||||||||||||||| ||| || |  ||| |  ||||||  |||||||  |||||||  ||||||||| ||||    
T  176302 ttattgaaaattgtgcattttatgttttagaaatttaaaatcctatattttcaagacaacatttatattttaatttcatttttatcttcttaacttgtgt 176203  T
Q  423 cataagggcacaagttaaca 442  Q
    | | ||||||||||||||||    
T  176202 ctttagggcacaagttaaca 176183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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