View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_19 (Length: 552)
Name: NF12055_high_19
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_19 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Complemental strand, 39093541 - 39093005
Alignment:
| Q |
16 |
atatcagcaagagggaccctcttcatctttcttttactactattcttcttgaaagatgaggccatgatagaaattgaattcttcttcttattttccccat |
115 |
Q |
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| T |
39093541 |
atatcagcaagagggaccctcttcatctttcttttactactattcttcttgaaagatgaggccatgatagaaattgaattcttcttcttattttccccat |
39093442 |
T |
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| Q |
116 |
tggtataaactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgataagattttcggagaaaagaaagagga |
215 |
Q |
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| T |
39093441 |
tggtataaactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgatgagattttcggagaaaagaaagagga |
39093342 |
T |
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| Q |
216 |
attcaatttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaa |
315 |
Q |
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| T |
39093341 |
attcaatttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaa |
39093242 |
T |
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| Q |
316 |
tgaaaatgaaggagggagtgaatatttannnnnnngagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatg |
415 |
Q |
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| T |
39093241 |
tgaaaatgaaggagggagtgaatatttatttttttgagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatg |
39093142 |
T |
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| Q |
416 |
aaaacgaggtacaagagtgaaaggaaaaatttgaaaatttggaggtaaataaaacactgaaactgaaatgttggcgggtaatggaagaagccaaaactat |
515 |
Q |
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| T |
39093141 |
aaaacgaggtacaagagtgaaaggaaaaatttgaaaatttggaggtaaataaaacactgaaactgaaatgttggcgggtaatggaagaagccaaaactat |
39093042 |
T |
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| Q |
516 |
ttggccaaaacttaggcatagcgtgcattttttcatt |
552 |
Q |
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| T |
39093041 |
ttggccaaaacttaggcatagcgtgcattttttcatt |
39093005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 39231885 - 39231835
Alignment:
| Q |
180 |
gcaacacgataagattttcggagaaaagaaagaggaattcaatttgagatg |
230 |
Q |
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| T |
39231885 |
gcaacaagatgagattttcggagaaaagaatgaggaattcaatttgagatg |
39231835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 39231838 - 39231795
Alignment:
| Q |
269 |
gatgtgaaaatgtttttactttttggagtgtgtttgagagggaa |
312 |
Q |
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| T |
39231838 |
gatgtgaaaatgtttttactttttcgaatgtgtttgagagggaa |
39231795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 39232002 - 39231953
Alignment:
| Q |
16 |
atatcagcaagagggaccctcttcatctttcttttactactattcttctt |
65 |
Q |
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| T |
39232002 |
atatctgcaagagggctcctcttcatctttctttcagtactattcttctt |
39231953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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