View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_high_23 (Length: 470)
Name: NF12055_high_23
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 132 - 452
Target Start/End: Complemental strand, 33372908 - 33372589
Alignment:
| Q |
132 |
ttcaatgttacacattctattgttcnnnnnnntgttacacattttaagacaaattataaaaaggataataaatgcatttaaaaatttataaacagtctta |
231 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33372908 |
ttcaatgttacacattctattgttcaaaaaaatgttac-cattttaagacaaattagaaaaaggataataaatgcatttaaaaatttataaagagtctta |
33372810 |
T |
|
| Q |
232 |
tattcaaggataaaatatttattgtaaaatgtcttataatcagtgacgaagaatgtaactattaacccaaattttgatactatcttgtgattcatcgacg |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33372809 |
tattcaaggataaaatatttattgtaaaatgtcttataattagtgacgaagaatgcaactattaacccaaattttgatactatcttgtgattcatcgacg |
33372710 |
T |
|
| Q |
332 |
tacattctaagaaagtatttataaattaacattatcccatgataccacaggttgtgtcactaatacgactaaataaaaggaatcccaaaaaactgattat |
431 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33372709 |
tacattcgaagaaagtatttataaattaacattatcccatgataccacaggttgtgtcactaatacgactaaataaaaggaatcccaaaaaactgattat |
33372610 |
T |
|
| Q |
432 |
acaatgaattaacatgccatt |
452 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33372609 |
acaatgaattaacatgccatt |
33372589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 25250887 - 25250993
Alignment:
| Q |
15 |
gagcagagagcttaccgtctgtttctattagagtcgcgagcttgttgtagtcggtccgtgaagggataacttgctgcttacttgctatatccccgcgttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| | |||| |
|
|
| T |
25250887 |
gagcagagagcttaccgtctgtttctattagagtctcgagcttgttgtagtcggtccgtgaagggataacttgccgcttacttgatatgcccctgtgttc |
25250986 |
T |
|
| Q |
115 |
ttgcacg |
121 |
Q |
| |
|
||||||| |
|
|
| T |
25250987 |
ttgcacg |
25250993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 19093711 - 19093787
Alignment:
| Q |
15 |
gagcagagagcttaccgtctgtttctattagagtcgcgagcttgttgtagtcggtccgtgaagggataacttgctgc |
91 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
19093711 |
gagcagagagcttaccgtcggtttctattagagtcgcgagcttgttgtagtcggaccatgaagggataacttgctgc |
19093787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 10456786 - 10456748
Alignment:
| Q |
197 |
taataaatgcatttaaaaatttataaacagtcttatatt |
235 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
10456786 |
taataaatgcatctaaaaatttataaatagtcttatatt |
10456748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University