View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_26 (Length: 378)
Name: NF12055_high_26
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 5708169 - 5707824
Alignment:
| Q |
1 |
aatcttttgcgcaaggtaaaccacaatggattgtaaactcatcctcaaacatttaacaatgttgcatttttataattgaatttgaaattaggatatttag |
100 |
Q |
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| T |
5708169 |
aatcttttgcgcaaggtaaaccacaatggattgtaaactcatcctcaaacatttaacaatgttgcatttgtatgattgaatttgaaattaggacatttag |
5708070 |
T |
|
| Q |
101 |
gtaaattcgaagacatctattacaatcacctcatggatacttagtcatgggtctttggtatagccatgtatggaatagtcaacttctcaatccaaccnnn |
200 |
Q |
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| T |
5708069 |
gtaaactcgaagacatctattacaatcatctcatggatacttagtcatgggtctttggtatagtcatgtatggaatagtcaacttctcaatccaaccaaa |
5707970 |
T |
|
| Q |
201 |
nnnntgtagggggtttatcggaagcgtcttatcggaagcacgcttccgatgatgtttttatcagaaaaatatgatactctgtttcgatatatttaaacat |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||| | ||||||||||||||||||||| |
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| T |
5707969 |
aaaatgtagggggt--------------ttatcggaagcacgcttccgatgatgtttttttc-ggaaaatatgatattttgtttcgatatatttaaacat |
5707885 |
T |
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| Q |
301 |
ataggcgtggattgagggactctaaaaaattcacctccaaattgacctcccacctcataaa |
361 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5707884 |
ataggtgtggattgagagactctaaaaaattcacctccaaattgacctcccacctcataaa |
5707824 |
T |
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