View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_high_30 (Length: 367)

Name: NF12055_high_30
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_high_30
NF12055_high_30
[»] chr7 (3 HSPs)
chr7 (167-358)||(19747441-19747630)
chr7 (19-63)||(19747293-19747337)
chr7 (175-236)||(10022929-10022990)
[»] chr1 (1 HSPs)
chr1 (250-312)||(51759903-51759965)
[»] scaffold1808 (1 HSPs)
scaffold1808 (19-63)||(1126-1170)
[»] chr2 (3 HSPs)
chr2 (175-311)||(15514539-15514670)
chr2 (19-57)||(30267657-30267695)
chr2 (19-57)||(44923931-44923969)
[»] scaffold0105 (1 HSPs)
scaffold0105 (19-57)||(27-65)
[»] chr4 (2 HSPs)
chr4 (19-57)||(47065442-47065480)
chr4 (19-57)||(53301007-53301045)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 167 - 358
Target Start/End: Original strand, 19747441 - 19747630
Alignment:
Q  167 tagcatctttagtgatagtaccaacatgaagaagaaggatgaaactgaagcaatccagagatattaacacaaannnnnnnnnnatctaaaagagcaagga 266  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          ||||||||||||||||     
T  19747441 tagcatctttagtgatagtaccaacatgaagaagaatgatgaaactgaagcaatccagagatattaacacaaatttttttt--atctaaaagagcaaggc 19747538  T
Q  267 aattttaaaattaccattattcaaactgtaaagcattccaccaattttaaagggcaacccctctgtcatgttttgattaaaatacttcttct 358  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747539 aattttaaaattaccattattcaaactgtaaagcattccatcaattttaaagggcaacccctctgtcatgttttgattaaaatacttcttct 19747630  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 19747293 - 19747337
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatcatagagc 63  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  19747293 gtagcagcatagaaacacttgcaatgatatcaacaatcacagagc 19747337  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 10022929 - 10022990
Alignment:
Q  175 ttagtgatagtaccaacatgaagaagaaggatgaaactgaagcaatccagagatattaacac 236  Q
    ||||| |||||| |||||||||  |||||| |||||||||||||||| ||||| ||| ||||    
T  10022929 ttagtaatagtatcaacatgaaacagaagggtgaaactgaagcaatcaagagacattcacac 10022990  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 51759903 - 51759965
Alignment:
Q  250 atctaaaagagcaaggaaattttaaaattaccattattcaaactgtaaagcattccaccaatt 312  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  51759903 atctaaaagaacaaggaaatttaataattaccattattcaaactgtgaagcattccaccaatt 51759965  T

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Target: scaffold1808 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 1126 - 1170
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatcatagagc 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  1126 gtagcagcatagaaaaacttgcaatgatatcaacaatcatagagc 1170  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 15514539 - 15514670
Alignment:
Q  175 ttagtgatagtaccaacatgaagaagaaggatgaaactgaagcaatccagagatattaaca-caaannnnnnnnnnatctaaaagagcaaggaaatttta 273  Q
    |||||| ||||| |||||||||| ||||||||| |||||||||| |||| ||||||||||| ||||          ||||||||||  |||  ||||| |    
T  15514539 ttagtggtagtatcaacatgaagcagaaggatggaactgaagca-tccaaagatattaacatcaaattttt-----atctaaaagaataagacaatttaa 15514632  T
Q  274 aaattaccattattcaaactgtaaagcattccaccaat 311  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  15514633 aaattaacattattcaaactgtgaagcattccaccaat 15514670  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 30267657 - 30267695
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatca 57  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  30267657 gtagcaacatagaaaaacttgcaatgatatcaacaatca 30267695  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 44923931 - 44923969
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatca 57  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  44923931 gtagcagcatagaaaaacttgcactgatatcaacaatca 44923969  T

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Target: scaffold0105 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 65 - 27
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatca 57  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  65 gtagcatcatagaaaaacttgcaatgatatcaacaatca 27  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 47065480 - 47065442
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatca 57  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  47065480 gtagcaacatagaaaaacttgcaatgatatcaacaatca 47065442  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 53301007 - 53301045
Alignment:
Q  19 gtagcagcatagaaacacttgcaatgatatcaacaatca 57  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  53301007 gtagcaacatagaaaaacttgcaatgatatcaacaatca 53301045  T

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