View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_31 (Length: 366)
Name: NF12055_high_31
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_31 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 37111200 - 37110864
Alignment:
| Q |
18 |
actgctatcgttgctttctttaccgatcttgggattctatcgaacctcttgtcgattgctactttgtttatcttttcgcttgtggcattggcacttctag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111200 |
actgctatcgttgctttctttaccgatcttgggattctatcgaacctcttgtcgattgctactttgtttatcttttcgcttgtggcattggcacttctag |
37111101 |
T |
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| Q |
118 |
tgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111100 |
tgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagc |
37111001 |
T |
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| Q |
218 |
ttcttgggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111000 |
ttcttgggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggca |
37110901 |
T |
|
| Q |
318 |
aagaagcctaaactatggggagttcctttggttcctt |
354 |
Q |
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| T |
37110900 |
aagaagcctaaactatggggagttcctttggttcctt |
37110864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 37119455 - 37119116
Alignment:
| Q |
18 |
actgctatcgttgctttctttaccgatcttgggattctatcgaacctcttgtcgattgctactttgtttatcttttcgcttgtggcattggcacttctag |
117 |
Q |
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|||||||||||||||||||| ||| ||||| | |||||||| | ||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37119455 |
actgctatcgttgctttcttcaccaatcttagtattctatctagccttttgtcgatttctactttgtttatcttttcacttgtggcattggcacttctag |
37119356 |
T |
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| Q |
118 |
tgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagc |
217 |
Q |
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| T |
37119355 |
taaggagatattattcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttcaattggaatttcagc |
37119256 |
T |
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| Q |
218 |
ttcttgggctaa---cagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatg |
314 |
Q |
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|| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119255 |
ttattgggctaatagtagtgagcataagtggattggatatacaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatg |
37119156 |
T |
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| Q |
315 |
gcaaagaagcctaaactatggggagttcctttggttcctt |
354 |
Q |
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| T |
37119155 |
gcaaagaagcctaagttatggggagttcctttggttcctt |
37119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 37136906 - 37136983
Alignment:
| Q |
126 |
tattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttca |
203 |
Q |
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|||||||||| || |||||||||||||| || ||||| || |||||||| ||| |||| |||||||||||||||||| |
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| T |
37136906 |
tattattcaactggggtaactacaaaagataatcaagttaagctcattgtatgtgttgttttgattattggatcttca |
37136983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 224 - 358
Target Start/End: Original strand, 29258630 - 29258764
Alignment:
| Q |
224 |
ggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaag |
323 |
Q |
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| T |
29258630 |
ggctaacaatgaacatggatagattgaatgcacaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaag |
29258729 |
T |
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| Q |
324 |
cctaaactatggggagttcctttggttcctttgct |
358 |
Q |
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|||||| |||||||||||| | ||||| ||||||| |
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| T |
29258730 |
cctaaattatggggagttcatgtggtttctttgct |
29258764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 329
Target Start/End: Original strand, 2960 - 3065
Alignment:
| Q |
224 |
ggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaag |
323 |
Q |
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|||||||| ||| ||||||| ||||| || | |||| |||||||||||||||||||| || || |||| ||||||||||| ||||||||||||||||||| |
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| T |
2960 |
ggctaacaatgaacatggatagattgaatgcacaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaag |
3059 |
T |
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| Q |
324 |
cctaaa |
329 |
Q |
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|||||| |
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| T |
3060 |
cctaaa |
3065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 39509441 - 39509328
Alignment:
| Q |
165 |
aatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagcttcttgggctaacagtgagcatggatggattggatacgcaatctttg |
264 |
Q |
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|||||||||| ||||||| |||| ||| ||| ||||||||||| | |||| || || | ||||| |||||||||||| ||||| || | |||| |||| |
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| T |
39509441 |
aatctcattgggtgtcttttgttaattgttgtatcttcaattgaaacttcaagttattag-ctaacggtgagcatggatagattgaatgcacaatttttg |
39509343 |
T |
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| Q |
265 |
ttccattgtggtttt |
279 |
Q |
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||||||||||||||| |
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| T |
39509342 |
ttccattgtggtttt |
39509328 |
T |
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