View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_34 (Length: 339)
Name: NF12055_high_34
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 7322091 - 7321790
Alignment:
| Q |
20 |
tcaactatgataagcaattcagttgcatcaggatgaaagtgcattggaacatttccatttatatcaaagtctccccttgctgcagagataccaagtccat |
119 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||| || |
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| T |
7322091 |
tcaactatgataagcaattcagtcgcatcaggatgaaagtgcattggaacagttccatttataccaaagtctccctttgctgcagagaaaccaagtcgat |
7321992 |
T |
|
| Q |
120 |
taagacctggtaaactagtgacaaatgcagtggttaatgtaacattaaaagggtctaatattgtgcttccaggtacaaagccagagaacacaaaatcatc |
219 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7321991 |
taagacctggtaaactagtaacaaaagcagtggttaatgtaacattaaaagggtctaatattgtgcttccgggtacaaagccagagaacacaaaatcatc |
7321892 |
T |
|
| Q |
220 |
tgctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaatcattgacagaagtagcataagag |
319 |
Q |
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||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7321891 |
tgctgttacatttgtttctgacttgcatggatagcctgaaggagtgtttggaagctgtaaatctgccacacagaaatcattgacagaagtagcataagag |
7321792 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
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|
| T |
7321791 |
gt |
7321790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 7319766 - 7319453
Alignment:
| Q |
22 |
aactatgataagcaattcagttgcatcaggatgaaagtgcattggaacatttccatttatatcaaagtctccccttgctgcagagataccaagtccatta |
121 |
Q |
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||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||| |
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| T |
7319766 |
aactacgataagcaattcatttgcatcaggatgaaaatgcattggaacagttccatttaagccaaagtccccccttgctgcggagataccaagtccatta |
7319667 |
T |
|
| Q |
122 |
agacctggtaaactagtgacaaatgcagtggttaatgtaacattaaaagggtctaatattgtgcttccaggtacaaagccagagaacacaaaatcatctg |
221 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||| | ||||| | ||||||||| |
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| T |
7319666 |
agacctggtaaactagtgacgaatgcagtggttaatctaacattaaaagggtc---tattgtgtttctaggtacaaagtcggagaataaaaaatcatcca |
7319570 |
T |
|
| Q |
222 |
ctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaatcattgacagaagtagcataagaggt |
321 |
Q |
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||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
7319569 |
ctgttacatttgtttctgacttgcatggatagcctgaaggggtatttggaagctgtaagtctgcaacacagaaatcattgactgaagtagcataagaggc |
7319470 |
T |
|
| Q |
322 |
atatgatgagggaagag |
338 |
Q |
| |
|
||||||| || |||||| |
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|
| T |
7319469 |
atatgataagagaagag |
7319453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 7324681 - 7324579
Alignment:
| Q |
197 |
aagccagagaacacaaaatcatctgctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaat |
296 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||| || |||||||||| ||||| | ||||||||| |||||||||| |
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| T |
7324681 |
aagccagagaatacaaaatcatcagctgttacattgttttccgacttgcatggatagcccgaaggggtgtctggaaacgataagtctgctacacagaaat |
7324582 |
T |
|
| Q |
297 |
cat |
299 |
Q |
| |
|
||| |
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|
| T |
7324581 |
cat |
7324579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 7318358 - 7318405
Alignment:
| Q |
35 |
aattcagttgcatcaggatgaaagtgcattggaacatttccatttata |
82 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||||||||||| |
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|
| T |
7318358 |
aattcagttgcatcaggatgagtgtgcattggtacacttccatttata |
7318405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 7324786 - 7324750
Alignment:
| Q |
95 |
cttgctgcagagataccaagtccattaagacctggta |
131 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |
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|
| T |
7324786 |
cttgctacagagataccaagtccattgagacctggta |
7324750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 2345248 - 2345513
Alignment:
| Q |
28 |
gataagcaattcagttgcatcaggatgaaagtgcattggaacatttccatttatatcaaagtctccccttgctgcagagataccaagtccattaagacct |
127 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||| ||||||| ||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
2345248 |
gataagtaattcagttgcatca---tgagtgtgcactggaacacttccatttataccaaaatctgctcttgctgcagagataccaagtccattaagacct |
2345344 |
T |
|
| Q |
128 |
ggtaaactagtgacaaatgcagtggttaatgtaacattaaaagggtctaatattgtgcttccaggtacaaagccagagaacacaaaatcatctgctgtta |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| || || ||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
2345345 |
ggtaaactagtgacaaatgcagatgttattgcaaaattaaaagggttta---ttgtgcttccaggtactaagccagagaacacaaaatcattcactgtta |
2345441 |
T |
|
| Q |
228 |
catttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaatcat |
299 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||| || |||||||||| ||||| ||||||| |
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| T |
2345442 |
catttgtttctgatttgcatggatagcctgaaggggtgtttgggagtagtaagtctgctacacataaatcat |
2345513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 6521574 - 6521468
Alignment:
| Q |
26 |
atgataagcaattcagttgcatcaggatgaaagtgcattggaacatttccatttatatcaaagtctccccttgctgcagagataccaagtccattaagac |
125 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||||| ||||||| | ||| |||| | ||||||||||| ||| |||||||||| |||| |
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|
| T |
6521574 |
atgattagtaattcagttgcatcaggatgagtatgcattggaacagatccatttggaccaatgtctactcttgctgcagatatatcaagtccattgagac |
6521475 |
T |
|
| Q |
126 |
ctggtaa |
132 |
Q |
| |
|
|||||| |
|
|
| T |
6521474 |
ttggtaa |
6521468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 32984314 - 32984281
Alignment:
| Q |
186 |
ttccaggtacaaagccagagaacacaaaatcatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
32984314 |
ttccaggtacaaagccagagaacacaaaatcatc |
32984281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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