View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_35 (Length: 330)
Name: NF12055_high_35
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 37582040 - 37582163
Alignment:
| Q |
19 |
caatcttactgttattgccaatacacacaagaagttattcttggatcaaatgtgaaccatcaaatgtattaccatgttcttgtaattggagaaaggtttt |
118 |
Q |
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| T |
37582040 |
caatcttactgttattgccaatacacacaagaagttattcttggatcaaatgtgaaccatcaaatgtattaccatgttcttgtaattggagaaaggtttt |
37582139 |
T |
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| Q |
119 |
tcaattttttatgcaactgcagtt |
142 |
Q |
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| T |
37582140 |
tcaattttttatgcaactgcagtt |
37582163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 37582186 - 37582296
Alignment:
| Q |
208 |
acaatagtgattcatcacttgcatattcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaat |
307 |
Q |
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| T |
37582186 |
acaatagtgattcatcacttgcatattcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaag |
37582285 |
T |
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| Q |
308 |
gcttttacctt |
318 |
Q |
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| T |
37582286 |
gcttttacctt |
37582296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 37588511 - 37588596
Alignment:
| Q |
234 |
tcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttg |
320 |
Q |
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| T |
37588511 |
tcctttgttgtttcaccaaacactgcaaa-tcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacctttg |
37588596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 37465634 - 37465575
Alignment:
| Q |
261 |
aaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttg |
320 |
Q |
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| T |
37465634 |
aaatcgcaaacttcctacgcgttaatggctgcctgtaattgttcaaggcttttacctttg |
37465575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 6776576 - 6776626
Alignment:
| Q |
270 |
acttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttg |
320 |
Q |
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| T |
6776576 |
acttcctacgcgttaatggctgcctgtaattgttcaaggcttttacctttg |
6776626 |
T |
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