View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_high_4 (Length: 960)

Name: NF12055_high_4
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_high_4
NF12055_high_4
[»] chr3 (1 HSPs)
chr3 (94-946)||(28542865-28543701)


Alignment Details
Target: chr3 (Bit Score: 772; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 94 - 946
Target Start/End: Original strand, 28542865 - 28543701
Alignment:
Q  94 ccatcccaatcaagttacaaccacccatttgatgctgacaatttttaaattatacttaagaataaatttaatcatgaaaataaaaattattcaattcagt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28542865 ccatcccaatcaagttacaaccacccatttgatgctgacaatttttaaattatacttaagaataaatttaatcatgaaaataaaaattattcaattcagt 28542964  T
Q  194 aaggccaaatatacaattctactgaatcatacaagtattgtaatttgtaagtgaaaagaaaaactgttgattgcaactgtactgaagcaatgcgatg--- 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28542965 aaggccaaatatacaattctactgaatcatacaagtattgtaatttgtaagtgaaaagaaaaactgttgattgcaactgtactgaagcaatgcgatgatg 28543064  T
Q  291 accgtttgatcgatcatcaagcagcaggaaatgtggtggaatcatcacttgctatgttttgcttttgaaagagttttgaccatacccttggcaatcttcc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543065 accgtttgatcgatcatcaagcagcaggaaatgtggtggaatcatcacttgctatgttttgcttttgaaagagttttgaccatacccttggcaatcttcc 28543164  T
Q  391 agaaccaaaataaattcatcattgacaacacaggaggcaccaccagcaaactgtagaaacccattgggaagacctgcttcacctgaagtaagggagaaaa 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543165 agaaccaaaataaattcatcattgacaacacaggaggcaccaccagcaaactgtagaaacccattgggaagacctgcttcacctgaagtaagggagaaaa 28543264  T
Q  491 agtttagacttattcaccagattacagtcatagggaaaccattaaatatatatgcgatgaggaatcacagaaagcatgcagacctcatcaaaatgggtcc 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543265 agtttagacttattcaccagattacagtcatagggaaaccattaaatatatatgcgatgaggaatcacagaaagcatgcagacctcatcaaaatgggtcc 28543364  T
Q  591 acatgtgtgtaaacaagaacatgaacaagaaaatccttgctacctgcaggataaacaaaaacagttgtgttatttgaaatcaaaatacataaccgtgtgc 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28543365 acatgtgtgtaaacaagaacatgaacaagaaaatccttgctacctgcaggataaataaaaacagttgtgttatttgaaatcaaaatacataaccgtgtgc 28543464  T
Q  691 gtttaaaacttgcatgtttgtttaaaccagttttcaatgaaaaacataaaggagtaaagcattccatacatcaaatgactcaaattcacaatctgttgtt 790  Q
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543465 -------------------gtttaaaccagttttcaatgaaaaacataaaggagtaaagcattccatacatcaaatgactcaaattcacaatctgttgtt 28543545  T
Q  791 taaaagcaaatttctacagcattcaaagcatgcatgtgtcgagaaccagcattttgtactttaactcctgattttaactttcgccgtacataacatagaa 890  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28543546 taaaagcaaatttctacagcattcaaagcatgcatgtgtcgagaaccagcattttgtactttaaatcctgattttaactttcgccgtacataacatagaa 28543645  T
Q  891 catgactggcgatctgttttctcgtgttctaacctttctatcaaacgctgcctatg 946  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543646 catgactggcgatctgttttctcgtgttctaacctttctatcaaacgctgcctatg 28543701  T

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