View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_high_40 (Length: 312)

Name: NF12055_high_40
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_high_40
NF12055_high_40
[»] chr7 (11 HSPs)
chr7 (18-291)||(43996264-43996537)
chr7 (111-204)||(34681690-34681782)
chr7 (119-207)||(27338257-27338344)
chr7 (111-229)||(35599818-35599935)
chr7 (111-234)||(18926296-18926417)
chr7 (102-187)||(35567129-35567214)
chr7 (63-108)||(16100109-16100154)
chr7 (137-202)||(33922782-33922846)
chr7 (60-207)||(36973331-36973479)
chr7 (52-98)||(37352366-37352412)
chr7 (63-152)||(10200618-10200707)
[»] chr8 (9 HSPs)
chr8 (114-234)||(39691133-39691252)
chr8 (85-207)||(31264992-31265113)
chr8 (58-209)||(25279922-25280070)
chr8 (114-208)||(1502689-1502783)
chr8 (115-209)||(37564352-37564445)
chr8 (111-182)||(29487075-29487146)
chr8 (63-142)||(24733231-24733310)
chr8 (129-207)||(15352105-15352181)
chr8 (114-182)||(25382642-25382710)
[»] chr6 (3 HSPs)
chr6 (63-209)||(25028666-25028811)
chr6 (111-207)||(6586433-6586528)
chr6 (87-151)||(31702732-31702796)
[»] chr2 (17 HSPs)
chr2 (87-207)||(13538391-13538510)
chr2 (63-211)||(14663147-14663295)
chr2 (111-207)||(44195502-44195597)
chr2 (87-235)||(18684327-18684476)
chr2 (86-204)||(41543975-41544093)
chr2 (93-154)||(9049148-9049209)
chr2 (114-207)||(32859780-32859872)
chr2 (103-206)||(38292364-38292467)
chr2 (100-154)||(12848477-12848531)
chr2 (90-142)||(13197309-13197361)
chr2 (116-207)||(8964387-8964477)
chr2 (115-154)||(9153494-9153533)
chr2 (59-181)||(31017271-31017393)
chr2 (116-206)||(2825977-2826066)
chr2 (111-185)||(36480511-36480584)
chr2 (114-183)||(45372735-45372803)
chr2 (61-133)||(32787548-32787619)
[»] chr4 (10 HSPs)
chr4 (86-209)||(2063468-2063590)
chr4 (111-207)||(48097947-48098042)
chr4 (114-208)||(24546727-24546820)
chr4 (87-208)||(19597142-19597262)
chr4 (87-235)||(49532243-49532389)
chr4 (114-201)||(52014573-52014658)
chr4 (113-202)||(12912862-12912950)
chr4 (111-229)||(9044208-9044324)
chr4 (111-209)||(53261551-53261648)
chr4 (54-154)||(51291133-51291233)
[»] chr1 (9 HSPs)
chr1 (101-204)||(5423752-5423854)
chr1 (83-207)||(5250889-5251012)
chr1 (111-209)||(44442243-44442340)
chr1 (63-206)||(46592437-46592579)
chr1 (113-207)||(1048688-1048780)
chr1 (130-200)||(1600951-1601020)
chr1 (63-142)||(34596089-34596167)
chr1 (64-134)||(52076450-52076520)
chr1 (126-187)||(26857222-26857282)
[»] chr3 (9 HSPs)
chr3 (63-236)||(54290746-54290917)
chr3 (114-206)||(11692729-11692820)
chr3 (111-206)||(43803965-43804059)
chr3 (85-182)||(30299300-30299396)
chr3 (114-154)||(33072130-33072170)
chr3 (159-235)||(39400340-39400416)
chr3 (61-119)||(49541889-49541945)
chr3 (112-209)||(53040462-53040558)
chr3 (62-154)||(53766660-53766752)
[»] scaffold0011 (1 HSPs)
scaffold0011 (114-209)||(219183-219277)
[»] chr5 (6 HSPs)
chr5 (114-207)||(16161414-16161506)
chr5 (111-235)||(25437890-25438014)
chr5 (111-206)||(967098-967192)
chr5 (54-206)||(24040983-24041133)
chr5 (168-209)||(4695065-4695106)
chr5 (114-154)||(14309106-14309146)
[»] scaffold0268 (1 HSPs)
scaffold0268 (63-152)||(20216-20305)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 43996537 - 43996264
Alignment:
Q  18 aatcttgccctccaaagctcttcaccagtgtcattctttttaggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttt 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||| | | ||||    
T  43996537 aatcttgcccttcaaagctcttcaccagtgtcattctttttagaaaaatgttaaccagtgtctctagggcactttttaagagccttaaatggagattttt 43996438  T
Q  118 tataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcgatgac 217  Q
    ||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43996437 tataaaaatttatgcatttaatgcattgaaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtcccgatgac 43996338  T
Q  218 acttgttaacaaaacccttctttttaatatgtcatagttcttcagcttcatcaactcatacgaaaaattgcaat 291  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  43996337 actcgttaacaaaacccttctttttaatatgtcatagttcttcagcttgatcaactcataggaaaaattgcaat 43996264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 34681782 - 34681690
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaaga 204  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||| | |||| |||||||| |||| |||| |||||||||||    
T  34681782 aactttttataaaaacttgtgtatttaatgcattggaaattgaac-tatttgacttttgtaaaaaataatttcctaatttagaatgcttaaaga 34681690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 27338344 - 27338257
Alignment:
Q  119 ataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    |||||||||||||||||||||  | |||||||||||||  ||| | || |||||||||||||||||||| |||| ||||||||||||||    
T  27338344 ataaaaatttgtgtatttaatatattggaaattgaactg-tttgatttttttaaagaataattttctaatttagcatgcttaaagagtg 27338257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 35599818 - 35599935
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 210  Q
    |||||||||| |||| || |||||| |||||| || || ||||||| |||| | || ||||||||||||||| |||| |||||||| ||||||||| |||    
T  35599818 aactttttatgaaaagttatgtattcaatgcattgaaatttgaact-atttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatct 35599916  T
Q  211 cgatgacacttgttaacaa 229  Q
    ||  | |||| ||||||||    
T  35599917 cggaggcactcgttaacaa 35599935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 18926417 - 18926296
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 210  Q
    |||||||||| |||| ||||||||| |||||| || |||||||||| |||| || | |||||||||||||||  | | |||  |||||||||||||| |     
T  18926417 aactttttatgaaaagttgtgtattcaatgcattgaaaattgaact-atttcacctttttaaagaataatttcatgatttaaaatgcttaaagagtgcc- 18926320  T
Q  211 cgatgacacttgttaacaaaaccc 234  Q
    | | |||||| |||||||||||||    
T  18926319 ctaggacactcgttaacaaaaccc 18926296  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 35567214 - 35567129
Alignment:
Q  102 ttaaatgaaaacttttt-ataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaa 187  Q
    |||||||| |||||||| |||||||| ||||||||||||| | |||||||| ||  ||||| |||| |||||| |||||||||||||    
T  35567214 ttaaatgataacttttttataaaaatatgtgtatttaatgtattggaaatt-aaaatatttgacttttttaaaaaataattttctaa 35567129  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 16100109 - 16100154
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatg 108  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  16100109 aaatattaacgagtgtttctaagacactctttaagatccttaaatg 16100154  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 33922782 - 33922846
Alignment:
Q  137 aatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaa 202  Q
    |||||| || |||||||||| |||| |||| |||||||||||||||||||| |||| |||||||||    
T  33922782 aatgcattgaaaattgaact-atttgacttttttaaagaataattttctaatttagaatgcttaaa 33922846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 36973479 - 36973331
Alignment:
Q  60 ggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaat-gaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaactta 158  Q
    |||||||||||| ||||| ||||| | |||||||||||    |||||| | ||  ||||||| ||||||||| |||||| |||| ||||||||||| |||    
T  36973479 ggaaaatgttaatgagtgcctctaggacactctttaagggttttaaatagtaatttttttatgaaaatttgtatatttattgcattggaaattgaa-tta 36973381  T
Q  159 ttt-aacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    ||| |  || |||||||||||| || |||| || | ||||||||||||||    
T  36973380 tttgattttttttaaagaataacttcctaatttggaatgcttaaagagtg 36973331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 37352366 - 37352412
Alignment:
Q  52 tctttttaggaaaatgttaacgagtgtctctaaggcactctttaaga 98  Q
    ||||||| || ||||||||||||||||| || |||||||||||||||    
T  37352366 tcttttttgggaaatgttaacgagtgtccctgaggcactctttaaga 37352412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 10200707 - 10200618
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattg 152  Q
    ||||||||||||||| ||  | | |||||||||||  | |||||||| || |||||||| ||| || ||||||||||||| | |||||||    
T  10200707 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttttatagaaagttatgtatttaatgcatttgaaattg 10200618  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 39691133 - 39691252
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcga 213  Q
    ||||||| |||||||||||||| |||||| || |||||||||| |||| |||| |||||||||||||||| |||  | | ||||||||||||||||||||    
T  39691133 tttttatgaaaatttgtgtattcaatgcattgaaaattgaact-atttgacttttttaaagaataattttttaatgtggaatgcttaaagagtgtctcga 39691231  T
Q  214 tgacacttgttaacaaaaccc 234  Q
     | |||| |||||||||||||    
T  39691232 gggcactcgttaacaaaaccc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 31265113 - 31264992
Alignment:
Q  85 ggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttc 184  Q
    |||||||||||||| ||| ||||   |||||||||| |||| ||||||||||||| || ||||||||||| || ||| |||| |||||||||||| || |    
T  31265113 ggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaa-ttgtttgacttttttaaagaataacttcc 31265015  T
Q  185 taacttagtatgcttaaagagtg 207  Q
    ||| |||| ||||||||||||||    
T  31265014 taatttagcatgcttaaagagtg 31264992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 25280070 - 25279922
Alignment:
Q  58 taggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaactt 157  Q
    |||| ||||||||||||||| | ||  |||||||||||||| ||| ||||   || ||||||| |||| || |||||||||| || ||||||||||| ||    
T  25280070 tagggaaatgttaacgagtgcccctg-ggcactctttaagagcctaaaatagtaaatttttatgaaaacttatgtatttaatacattggaaattgaa-tt 25279973  T
Q  158 atttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    |||| |||| |||||||||||| || |||| |||| ||||||||||||||||    
T  25279972 atttgactt-tttaaagaataacttcctaatttagcatgcttaaagagtgtc 25279922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 1502689 - 1502783
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgt 208  Q
    ||||||| |||||||| |||||||||||| || ||||||||||  || || || ||||||||||||||| |||| |||| ||| |||||||||||    
T  1502689 tttttatgaaaatttgcgtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcctaatttagaatgtttaaagagtgt 1502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 37564352 - 37564445
Alignment:
Q  115 ttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    |||||| |||| ||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||  ||| |||| ||| ||||||||||||    
T  37564352 ttttatgaaaacttgtgtatttaatacattggaaattgaac-tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtc 37564445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 29487075 - 29487146
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 182  Q
    |||||||||||||||| |||||||| |||||| || ||||||||||  || ||||| |||||||||||||||    
T  29487075 aactttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataattt 29487146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 24733310 - 24733231
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgca 142  Q
    |||||||||||||||||||   |||||||||||||  |||| |||   || |||||||||||||||||||| | ||||||    
T  24733310 aaatgttaacgagtgtctccggggcactctttaagtacctttaatagtaagtttttataaaaatttgtgtaatcaatgca 24733231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 15352105 - 15352181
Alignment:
Q  129 gtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    |||||||||||| | ||||||||||||| |||| |||| |||| ||||||||||| ||| |||| ||| ||||||||||    
T  15352105 gtgtatttaatg-attggaaattgaact-atttgacttttttacagaataattttttaatttagaatgtttaaagagtg 15352181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 25382710 - 25382642
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 182  Q
    ||||||||||||   |||||||||||||| ||||||||| |||  ||||  || |||||||||||||||    
T  25382710 tttttataaaaacaagtgtatttaatgcattggaaattggactattttactttttttaaagaataattt 25382642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 25028666 - 25028811
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttattta 162  Q
    ||||||||| ||||| ||  ||||||||||||||||  |||||||   |||||||||||||||  |||||||| |||||| || ||||||||| | |||     
T  25028666 aaatgttaatgagtgcctgcaaggcactctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaac-tgtttg 25028764  T
Q  163 acttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    |||| |||||||||||||||||||| || | ||| ||||||||||||    
T  25028765 acttttttaaagaataattttctaattttgaatgtttaaagagtgtc 25028811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 6586433 - 6586528
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    |||||||||| ||||||| ||| || ||||||  |||||||||||| || | |||| || ||||| |||||| |||| |||||||||||||||||||    
T  6586433 aactttttatgaaaatttatgttttcaatgcatcggaaattgaact-atctgactttttcaaagattaatttcctaatttagtatgcttaaagagtg 6586528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 31702732 - 31702796
Alignment:
Q  87 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaatt 151  Q
    |||||||||||||||||||||   |||||||||||||||| |||||| | |||||| | ||||||    
T  31702732 cactctttaagatccttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaatt 31702796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 13538510 - 13538391
Alignment:
Q  87 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 186  Q
    |||||||||||   |||||||   |||||||||| |||| || |||||| |||||| ||||||||||| |||||| | || |||||||||||||||||||    
T  13538510 cactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaa-ttatttgaattttttaaagaataattttcta 13538412  T
Q  187 acttagtatgcttaaagagtg 207  Q
    | |||||||||||||||||||    
T  13538411 atttagtatgcttaaagagtg 13538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 14663147 - 14663295
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaa-tttgtgtatttaatgcaatggaaattgaacttattt 161  Q
    |||||||||  ||||||||  ||||||||||||||   ||||||| | || |||||| ||||| |||||| |||||||| | ||||||||||||| ||||    
T  14663147 aaatgttaataagtgtctccgaggcactctttaagggtcttaaataataattttttaaaaaaaatttgtgcatttaatgtattggaaattgaact-attt 14663245  T
Q  162 aacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctc 211  Q
     |||| |||||||||||||||| ||| |||  ||||||||| ||||||||    
T  14663246 gacttatttaaagaataattttttaatttaaaatgcttaaaaagtgtctc 14663295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 44195597 - 44195502
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    |||||||||||||||  ||||||||||||||| || |||||||| ||||||||||| | |||||||||||||  ||| |||  ||||||||||||||    
T  44195597 aactttttataaaaacatgtgtatttaatgcattgtaaattgaa-ttatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtg 44195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 18684476 - 18684327
Alignment:
Q  87 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 186  Q
    |||||||||||| |||  ||| | |||||||||| |||||||||||||||||| || ||||||||||| || | | |||| |||||||||||| || |||    
T  18684476 cactctttaagagcctagaataataactttttatgaaaatttgtgtatttaatacattggaaattgaa-ttgtatgacttttttaaagaataacttccta 18684378  T
Q  187 acttagtatgctt--aaagagtgtctcgatgacacttgttaacaaaaccct 235  Q
    | |||| ||||||  |||||||||| |||   |||| |||||||| |||||    
T  18684377 atttagcatgctttaaaagagtgtcccgagagcactcgttaacaagaccct 18684327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 41544093 - 41543975
Alignment:
Q  86 gcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttct 185  Q
    ||||||||||||   ||||||| | || ||||||| |||| || |||||| | |||| |||||||||||||  || || || ||||||||||||||| ||    
T  41544093 gcactctttaagggtcttaaataataattttttatgaaaaattatgtattcattgcattggaaattgaactatttgaatttttttaaagaataatttcct 41543994  T
Q  186 aacttagtatgcttaaaga 204  Q
    || ||| ||||||||||||    
T  41543993 aatttaatatgcttaaaga 41543975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 9049148 - 9049209
Alignment:
Q  93 ttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaa 154  Q
    |||||| |||||||| | ||||||||||||||||||||||| |||||||| || ||||||||    
T  9049148 ttaagaaccttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaa 9049209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 32859872 - 32859780
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    ||||||| |||| ||||||||||||| || |||||||||||| | ||| |||| |||||||||||| || |||| |||| ||| ||||||||||    
T  32859872 tttttatgaaaacttgtgtatttaatacattggaaattgaac-tgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtg 32859780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 38292467 - 38292364
Alignment:
Q  103 taaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgt-ttaaagaataattttctaacttagtatgcttaa 201  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||  |||||||| ||||| |||| | | |||||||||||| |||| |||  ||||||||    
T  38292467 taaatgaaaattttttatgaaaagttgtgtatttaatgcattgataattgaac-tatttcacttttctaaaagaataatttcctaatttaaaatgcttaa 38292369  T
Q  202 agagt 206  Q
    |||||    
T  38292368 agagt 38292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 12848477 - 12848531
Alignment:
Q  100 ccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaa 154  Q
    |||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||    
T  12848477 ccttaaatgacaactttttatgaaagtttgtgtaattagtgcaatggaaattgaa 12848531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 13197361 - 13197309
Alignment:
Q  90 tctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgca 142  Q
    ||||||||||| |||||||| || ||||||||||||||| |||| ||||||||    
T  13197361 tctttaagatctttaaatgataattttttataaaaatttatgtaattaatgca 13197309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 8964477 - 8964387
Alignment:
Q  116 tttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    ||||| |||||||||||| | |||||| |||||||||||  ||||| |||| ||||||||||||||   ||| |||| ||||||||| ||||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaa-atattttacttttttaaagaataattacttaatttagaatgcttaaacagtg 8964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 9153494 - 9153533
Alignment:
Q  115 ttttataaaaatttgtgtatttaatgcaatggaaattgaa 154  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  9153494 ttttataaaaatttgtgtattcaatgcattggaaattgaa 9153533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 31017271 - 31017393
Alignment:
Q  59 aggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaacttttt-ataaaaatttgtgtatttaatgcaatggaaattgaactt 157  Q
    ||||||||||||||||||| ||    |||| ||||||||  | ||||||||||| ||||| || |||| ||||||||| |||||| || ||||| ||  |    
T  31017271 aggaaaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaatt-aaaat 31017369  T
Q  158 atttaacttgtttaaagaataatt 181  Q
    |||| |||| ||||||||||||||    
T  31017370 atttgacttttttaaagaataatt 31017393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 2825977 - 2826066
Alignment:
Q  116 tttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 206  Q
    ||||||||||| |||||| | |||||| ||||||| ||| | |||| |||| |||||| ||||||||  ||  ||||||||||||||||||    
T  2825977 tttataaaaatgtgtgtaatcaatgcattggaaatcgaaat-attttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 36480584 - 36480511
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttct 185  Q
    |||||||||||||||  ||||||||||||||| |||||||| |||  |||| |||| ||| || |||||||||||    
T  36480584 aactttttataaaaacatgtgtatttaatgcattggaaattaaac-aatttcactttttttaaaaataattttct 36480511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 45372735 - 45372803
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataatttt 183  Q
    ||||||||||||  ||||||||||||||| | |||||| ||| |||| ||||| |||||| |||||||||    
T  45372735 tttttataaaaacatgtgtatttaatgcattagaaattaaac-tattaaacttttttaaaaaataatttt 45372803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 32787548 - 32787619
Alignment:
Q  61 gaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgta 133  Q
    ||||||||||||||||| | | | ||||||| |||||| | |||||||| |||||| ||| ||||||||||||    
T  32787548 gaaaatgttaacgagtgccccca-ggcactcattaagacctttaaatgataactttatatgaaaatttgtgta 32787619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 2063590 - 2063468
Alignment:
Q  86 gcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttct 185  Q
    ||||||||||||| |||  |||   |||||||||| |||||||||||||||||| || |||||||||||| | ||| |||| |||||||||||| || ||    
T  2063590 gcactctttaagagcctagaatagtaactttttatgaaaatttgtgtatttaatacattggaaattgaac-tgtttgacttttttaaagaataacttcct 2063492  T
Q  186 aacttagtatgcttaaagagtgtc 209  Q
    || |||| ||||||||||||||||    
T  2063491 aatttagcatgcttaaagagtgtc 2063468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 48098042 - 48097947
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    |||||||||||||||  ||||||||||||| | |||||||||||| |||||||||| |||||||||||||||  ||| |||| || |||||| ||||    
T  48098042 aactttttataaaaacatgtgtatttaatgtattggaaattgaac-tatttaacttttttaaagaataatttcttaatttagaatacttaaaaagtg 48097947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 24546727 - 24546820
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgt 208  Q
    ||||||| |||||||||||||||||| || |||||||||||||  || || || ||||||||||||||| |||| |||  |||||||||||||||    
T  24546727 tttttatgaaaatttgtgtatttaatacattggaaattgaactgcttgaa-ttttttaaagaataatttcctaatttaacatgcttaaagagtgt 24546820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 19597142 - 19597262
Alignment:
Q  87 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 186  Q
    |||||||||||   ||||||| | ||| |||||||||||||| |||||| |||||| | |||||||||| ||||| || | ||||||||||||||| |||    
T  19597142 cactctttaagggtcttaaataataacattttataaaaatttatgtattcaatgcattagaaattgaac-tatttgacatttttaaagaataatttccta 19597240  T
Q  187 acttagtatgcttaaagagtgt 208  Q
    |  ||| ||||||||| |||||    
T  19597241 atgtagaatgcttaaaaagtgt 19597262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 49532243 - 49532389
Alignment:
Q  87 cactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttcta 186  Q
    |||||||||||  ||||||||   ||||||| |||||||  ||||||||||||||| ||||||||||| |||||| | || | |||||||||||||  ||    
T  49532243 cactctttaagggccttaaatagtaacttttaataaaaacatgtgtatttaatgcattggaaattgaa-ttatttga-ttttataaagaataatttctta 49532340  T
Q  187 acttagtatgcttaaagagtgtctcgatgacacttgttaacaaaaccct 235  Q
    | || | ||||||| |||||||| ||  | |||| |||||||| |||||    
T  49532341 atttggaatgcttacagagtgtcccgggggcactcgttaacaagaccct 49532389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 52014658 - 52014573
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaa 201  Q
    ||||||| ||||||||||||| ||||||| ||||||||| | |||||| |||| ||||| ||||||||| |||| |||| ||||||||    
T  52014658 tttttatgaaaatttgtgtatctaatgcattggaaattgga-ttatttgacttttttaatgaataatttcctaa-ttagaatgcttaa 52014573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 12912862 - 12912950
Alignment:
Q  113 ctttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaa 202  Q
    |||||||||||||||||||||||||||||  | ||||||||| |||||| |||| |||||  ||| |||| |||| |||  |||||||||    
T  12912862 ctttttataaaaatttgtgtatttaatgctttagaaattgaa-ttatttgacttttttaataaatgatttcctaatttaaaatgcttaaa 12912950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 9044324 - 9044208
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 210  Q
    ||||||||  ||||| ||||||||| |||||  || |||||||||| |||| |||| | |||  ||||||||||||| |||  ||| ||||||| |||||    
T  9044324 aacttttttaaaaaacttgtgtattcaatgctttgcaaattgaact-atttgacttttctaataaataattttctaatttaaaatgtttaaagaatgtct 9044226  T
Q  211 cgatgacacttgttaacaa 229  Q
    ||| |||||| ||||||||    
T  9044225 cga-gacactcgttaacaa 9044208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 53261648 - 53261551
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    |||||||||||||| |||||||| | | |||| |||||||||||    ||||| || ||||||||||||||   ||| |||| ||||||||||||||||    
T  53261648 aactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatt-tttaaagaataattacttaatttagcatgcttaaagagtgtc 53261551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 51291233 - 51291133
Alignment:
Q  54 tttttaggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattga 153  Q
    |||||||| ||||||||||||||| | |   |||||||||||||  ||| |||||  ||  |||||| ||| |||||| ||||| |||| ||||||||||    
T  51291233 tttttagggaaatgttaacgagtgccccgggggcactctttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattga 51291134  T
Q  154 a 154  Q
    |    
T  51291133 a 51291133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 5423752 - 5423854
Alignment:
Q  101 cttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgctta 200  Q
    ||||||||  || ||||||| |||| || ||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||| |||  |||||||    
T  5423752 cttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaact-atttaacttttttaaagaataattttctaatttaaaatgctta 5423850  T
Q  201 aaga 204  Q
    ||||    
T  5423851 aaga 5423854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 5250889 - 5251012
Alignment:
Q  83 aaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 182  Q
    |||||||||||||||| | | |||| | || ||||||| |||||||||||||||||| || || ||||| ||| | ||| |||| |||||||||||| ||    
T  5250889 aaggcactctttaagagcataaaataataattttttatgaaaatttgtgtatttaatacattgaaaattaaac-tgtttgacttttttaaagaataactt 5250987  T
Q  183 tctaacttagtatgcttaaagagtg 207  Q
     |||| |||||||| ||||||||||    
T  5250988 cctaatttagtatgtttaaagagtg 5251012  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 44442340 - 44442243
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    |||||||||||||||| ||||||||||||| | || ||||||||  ||||| |||| ||||||||||||||| |||| |||  || |||||| ||||||    
T  44442340 aactttttataaaaatatgtgtatttaatgtattgaaaattgaa-atatttgacttttttaaagaataatttcctaatttaaaatacttaaaaagtgtc 44442243  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 46592437 - 46592579
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttattta 162  Q
    ||||||||||||||||| |    ||||||||||||| |||  |||   |||||||||| |||| |||| ||||||||  | |||||||| ||||  |||     
T  46592437 aaatgttaacgagtgtccccggagcactctttaagagcctagaatagtaactttttatgaaaacttgtctatttaatatattggaaattaaactg-tttg 46592535  T
Q  163 acttgtttaaagaataattttctaacttagtatgcttaaagagt 206  Q
    |||| |||||||||||| || |||| |||| |||||||||||||    
T  46592536 acttttttaaagaataacttcctaatttagcatgcttaaagagt 46592579  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 1048688 - 1048780
Alignment:
Q  113 ctttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    |||||||| |||| || || ||| || ||| || |||||||||| ||||||||| |||||||||||||||| ||| || ||||||||||||||||    
T  1048688 ctttttatgaaaaattatgcattcaacgcattgaaaattgaact-atttaactt-tttaaagaataattttttaatttggtatgcttaaagagtg 1048780  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 1601020 - 1600951
Alignment:
Q  130 tgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgctta 200  Q
    ||||||||||||| | ||||||||||| ||||||| | |||||||||||||||| ||| |||| |||||||    
T  1601020 tgtatttaatgcatttgaaattgaact-atttaacatttttaaagaataattttgtaatttagaatgctta 1600951  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 34596089 - 34596167
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgca 142  Q
    ||||||||| |||| |||||||| |||||||||||| | |||||||| |||||||||| ||| | |||||| | ||||||    
T  34596089 aaatgttaatgagt-tctctaagacactctttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgca 34596167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 52076520 - 52076450
Alignment:
Q  64 aatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtat 134  Q
    ||||||||||||||||| | | |||||||||||    ||||||||| |||||||||| |||| ||||||||    
T  52076520 aatgttaacgagtgtctatgaagcactctttaaatgtcttaaatgataactttttatgaaaacttgtgtat 52076450  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 26857222 - 26857282
Alignment:
Q  126 tttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaa 187  Q
    ||||| |||| |||||| || ||||| |||| ||||||||| ||||||||||||||||||||    
T  26857222 tttgtatattcaatgcattgaaaattaaact-atttaacttttttaaagaataattttctaa 26857282  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 54290746 - 54290917
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttattta 162  Q
    ||||||||||||||| | | | || ||||||||||| ||| |||| | | |||||||| |||| ||||||||||||| || |||||||||||| | |||     
T  54290746 aaatgttaacgagtgccccga-ggtactctttaagagcctaaaataatatctttttatgaaaacttgtgtatttaatacattggaaattgaac-tgtttg 54290843  T
Q  163 acttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcgatgacacttgttaacaaaaccctt 236  Q
    |||| |||||||||||| || |||| |||  |||||||||||||| | ||  || ||| |||||||| ||||||    
T  54290844 acttttttaaagaataacttcctaatttatcatgcttaaagagtgccccggggatactcgttaacaagaccctt 54290917  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 11692820 - 11692729
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 206  Q
    |||||||||||| || |||||||||| || || ||||| |||| |||| |||| |||||||||||||||| ||| ||| ||||||||||||||    
T  11692820 tttttataaaaacttatgtatttaatacattgcaaattaaact-atttcacttttttaaagaataattttttaatttaatatgcttaaagagt 11692729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 43804059 - 43803965
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 206  Q
    |||||||||| |||| ||||||||||||| || ||||||||||| || ||| |||| |||||||||||| |||| || |||  |||||||||||||    
T  43804059 aactttttatgaaaacttgtgtatttaatacattggaaattgaa-ttgtttgacttttttaaagaataactttccaatttatcatgcttaaagagt 43803965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 30299396 - 30299300
Alignment:
Q  85 ggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattt 182  Q
    |||||||||||||   ||||||||| |||| |||||  |||||||| ||||||||||| || |||||||| ||| || |||| |||||||||||||||    
T  30299396 ggcactctttaagggtcttaaatgataactatttatgcaaatttgtatatttaatgcattgaaaattgaa-ttacttgacttttttaaagaataattt 30299300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 33072130 - 33072170
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaa 154  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  33072130 tttttataaaaatttgtgtaattaatgcattggaaattgaa 33072170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 39400340 - 39400416
Alignment:
Q  159 tttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtctcgatgacacttgttaacaaaaccct 235  Q
    |||||||||||||||||||||||   ||  ||||||| ||||||||||||| ||  | |||| ||||||||||||||    
T  39400340 tttaacttgtttaaagaataattaattattttagtatacttaaagagtgtcacgggggcactcgttaacaaaaccct 39400416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 49541945 - 49541889
Alignment:
Q  61 gaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaacttttta 119  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||| |||||    
T  49541945 gaaaatgttaacgagtgtctc--agacactctttaagatctttaaataaaaacatttta 49541889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 53040558 - 53040462
Alignment:
Q  112 actttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    ||||||||| ||| |||||||||| ||| || |||||||||||  ||||| | || |||||| ||||||||  ||| |||| || |||||||||||||    
T  53040558 actttttatgaaagtttgtgtattcaatacattggaaattgaa-gtatttgaattttttaaataataatttcttaatttagaatccttaaagagtgtc 53040462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 53766660 - 53766752
Alignment:
Q  62 aaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattgaa 154  Q
    ||||||||||||||||||||| | | ||||||||||   || |||||  ||  |||||| ||| |||||||||||| |||| || ||||||||    
T  53766660 aaaatgttaacgagtgtctctgatgtactctttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaa 53766752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 219277 - 219183
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||||| |||| | ||||||||||||| |||| |||  ||||||||||| ||||    
T  219277 tttttataaaaatatatgtatttaatgcattggaaattgaac-tatttgacttttgtaaagaataatttcctaatttaaaatgcttaaagaatgtc 219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 16161506 - 16161414
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtg 207  Q
    ||||||||||||| |||||||||||| || || |||||||| ||||||||||| ||| || |||||||| |||| || | ||||||||||||||    
T  16161506 tttttataaaaatatgtgtatttaatccattgaaaattgaa-ttatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtg 16161414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 25437890 - 25438014
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagtgtct 210  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||  || |  || |||||||||||| ||  ||| |||| ||||||||||||||||     
T  25437890 aactttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatttagcatgcttaaagagtgtcc 25437989  T
Q  211 cgatgacacttgttaacaaaaccct 235  Q
    ||  | |||| |||||||| |||||    
T  25437990 cgggggcactcgttaacaagaccct 25438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 967192 - 967098
Alignment:
Q  111 aactttttataaaaatttgtgtatttaatgcaatggaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 206  Q
    ||||||| || ||||||  |||||| |||||| ||||||||||||| |||| | || ||||||||||||| | |||| || |||||||||||||||    
T  967192 aacttttcatgaaaattcatgtattcaatgcattggaaattgaact-atttgaattttttaaagaataatatcctaatttggtatgcttaaagagt 967098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 24040983 - 24041133
Alignment:
Q  54 tttttaggaaaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattga 153  Q
    |||| ||| |||||||||||||||||| | |  |||| ||||||   |||||||   |||||||||| |||| || ||||||||||| | |||||||| |    
T  24040983 ttttaagggaaatgttaacgagtgtctttgaa-cactttttaagggtcttaaatagtaactttttatgaaaagttatgtatttaatgtattggaaattaa 24041081  T
Q  154 acttatttaacttgtttaaagaataattttctaacttagtatgcttaaagagt 206  Q
    || ||||| | || |||||||||||||||  ||| ||  ||||||||||||||    
T  24041082 ac-tatttgaattttttaaagaataatttcataatttgatatgcttaaagagt 24041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 4695106 - 4695065
Alignment:
Q  168 tttaaagaataattttctaacttagtatgcttaaagagtgtc 209  Q
    |||||||||||||||| ||| |||| ||||||||||||||||    
T  4695106 tttaaagaataattttttaatttagcatgcttaaagagtgtc 4695065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 14309106 - 14309146
Alignment:
Q  114 tttttataaaaatttgtgtatttaatgcaatggaaattgaa 154  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  14309106 tttttatgaaaatttgtgtaattaatgcattggaaattgaa 14309146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 20216 - 20305
Alignment:
Q  63 aaatgttaacgagtgtctctaaggcactctttaagatccttaaatgaaaactttttataaaaatttgtgtatttaatgcaatggaaattg 152  Q
    ||||||||||||||| ||  | | |||||||||||  | |||||||| || ||||||| |||| |||||||||||||||| | |||||||    
T  20216 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttttatgaaaagttgtgtatttaatgcatttgaaattg 20305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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