View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_high_44 (Length: 291)

Name: NF12055_high_44
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_high_44
NF12055_high_44
[»] chr1 (3 HSPs)
chr1 (1-283)||(36397803-36398086)
chr1 (112-278)||(2943316-2943481)
chr1 (84-133)||(26555336-26555385)
[»] chr7 (3 HSPs)
chr7 (19-266)||(34869768-34870013)
chr7 (1-202)||(7410827-7411026)
chr7 (29-127)||(29280797-29280891)
[»] chr8 (2 HSPs)
chr8 (87-157)||(1386491-1386561)
chr8 (219-268)||(1386374-1386423)
[»] chr5 (1 HSPs)
chr5 (87-157)||(16125795-16125865)
[»] chr3 (1 HSPs)
chr3 (105-183)||(1762718-1762796)
[»] chr2 (1 HSPs)
chr2 (76-165)||(8387737-8387826)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 36398086 - 36397803
Alignment:
Q  1 ccttcatccaccaccacgaatgaatctaaatactatcaagaagttgatcatgagtcgatatgttgttgttaaaatttcttgagttgcgttctttccaaat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36398086 ccttcatccaccaccatgaatgaatctaaatactatcaagaagttgatcatgagtcgatatgttgttgttaaaatttcttgagttgcgttctttccaaat 36397987  T
Q  101 aacccaaagacaggccaaccaaacaactt-gaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcgagtgacacctaatatc 199  Q
    |||||||||| ||||||||||||||||||  |||||||  |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  36397986 aacccaaagagaggccaaccaaacaacttaaaaagcaagtacggatgttctttttgaatgcatgcacatcaaaaaattgttgcgcgtgacacctaatatc 36397887  T
Q  200 cgaagtaacaactgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcacactattaatctctgct 283  Q
     |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||| ||||    
T  36397886 tgaagtaacaactgttaagatgcccaatcaacgatgaacaagatatcaaatactaccaaagaagtcacactattaatctttgct 36397803  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 2943316 - 2943481
Alignment:
Q  112 aggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcgagtgacacctaatatccgaagtaacaac 211  Q
    |||||||||||||||||||||||||| |  | |||||||||||||||||||||   |||||||||||||||  |||| || ||| |||||||||||||||    
T  2943316 aggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaatgcatgcgcgtcaaaaaactgttgcacgtga-acataacatccgaagtaacaac 2943414  T
Q  212 tgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcacactattaatct 278  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  2943415 tgttaagatacccaatcaacaatgaaggagataccaaatactaccaaagaagtcgcactattaatct 2943481  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 26555336 - 26555385
Alignment:
Q  84 ttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaa 133  Q
    |||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  26555336 ttgctttctttcaaaatgacccaaagacagaccaaccaaacaacttgaaa 26555385  T

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Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 34870013 - 34869768
Alignment:
Q  19 aatgaatctaaatactatcaagaagttgatcatgagtcgatatgttgttgttaaaatttcttgagttgcgttctttccaaataacccaaagacaggccaa 118  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||| || |||||| || ||||    
T  34870013 aatgaatcttaatattattaagaagttgatcatgagtcgatatgttgttgttaaaaattcttcagttgcattctttctaaatgactcaaagatagaccaa 34869914  T
Q  119 ccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcgagtgacacctaatatccgaagtaacaactgttaag 218  Q
    ||||| ||||||||||||  | || ||||||||| |||| ||||||    ||||||| |||| || |||||||| |||||||||||||||||  ||| ||    
T  34869913 ccaaataacttgaaagcaggcgcgaatgttctttctgaaagcatgc--gccaaaaaagtgtttcgtgtgacacccaatatccgaagtaacaatcgttgag 34869816  T
Q  219 atgcccaatcaacgatgaatgagataccaaatactaccaaagaagtca 266  Q
    ||| |||| || |||||||  ||||| |||| ||||||||||||||||    
T  34869815 atgtccaaccatcgatgaacaagatatcaaacactaccaaagaagtca 34869768  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 7411026 - 7410827
Alignment:
Q  1 ccttcatccaccaccacgaatgaatctaaatactatcaagaagttgatcatgagtcgatatgttgttgttaaaatttcttgagttgcgttctttccaaat 100  Q
    |||||| ||||||||| ||||| | || |||||||| ||||||||||||| ||||| ||||  | ||||||||| ||||||||||| |||||||||||||    
T  7411026 ccttcaaccaccaccaagaatggagcttaatactatgaagaagttgatcaagagtcaatat--tattgttaaaaattcttgagttgggttctttccaaat 7410929  T
Q  101 aacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcgagtgacacctaatatcc 200  Q
     | ||||||||| |||||||||| ||||||||||||| | |  |||||||||||||| ||||||    ||||||||||||| | |||||  || ||||||    
T  7410928 gatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgacaaaaaactgttgtgtgtgacttctcatatcc 7410829  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 29280891 - 29280797
Alignment:
Q  29 aatactatcaagaagttgatcatgagtcgatatgttgttgttaaaatttcttgagttgcgttctttccaaataacccaaagacaggccaaccaaacaac 127  Q
    |||||||||||||||||||| ||||| | ||||  ||||||||||| ||||  ||||| |    |||| |||||||||||||||  ||||||| |||||    
T  29280891 aatactatcaagaagttgattatgagacaatattgtgttgttaaaacttctctagttgtg----ttcctaataacccaaagacaaaccaaccagacaac 29280797  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 1386561 - 1386491
Alignment:
Q  87 cgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaa 157  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |  | ||||||||||||||    
T  1386561 cgttcttttcaaatgacccaaagacaggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaa 1386491  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 1386423 - 1386374
Alignment:
Q  219 atgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcaca 268  Q
    |||||||||||| ||| || ||||| |||||||| |||||||||||||||    
T  1386423 atgcccaatcaatgataaaggagatgccaaatacgaccaaagaagtcaca 1386374  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 16125795 - 16125865
Alignment:
Q  87 cgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaa 157  Q
    ||||||||| |||| || ||||||||||||||||||||||| | ||||||| |||  |||||||| |||||    
T  16125795 cgttctttcgaaatgacacaaagacaggccaaccaaacaacctaaaagcaagcacaaatgttcttattgaa 16125865  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 1762796 - 1762718
Alignment:
Q  105 caaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcg 183  Q
    |||||| ||| |||||||||||||| ||||||| | |  ||||||||||||||||||||||   |||||| ||||||||    
T  1762796 caaagaaaggtcaaccaaacaacttcaaagcaagcgcaaatgttctttttgaatgcatgcacgccaaaaagctgttgcg 1762718  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 8387826 - 8387737
Alignment:
Q  76 ttcttgagttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgca 165  Q
    ||||||| || | |||||||||| | ||||||||||||| |||||| ||||| ||| ||||   ||| |||||||||||||| |||||||    
T  8387826 ttcttgaattacattctttccaattgacccaaagacaggacaaccacacaacctgagagcatagacgaatgttctttttgaaagcatgca 8387737  T

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