View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_48 (Length: 281)
Name: NF12055_high_48
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 53120577 - 53120314
Alignment:
| Q |
2 |
ttcacaaacagagtagtggttccttgataatggaagctacaacgttggaggctacagctccggcaaccaccgacactgtaagcaactcggaaccttctct |
101 |
Q |
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| T |
53120577 |
ttcacaaacagagtagtggttccttgataatggaagctacaacgttggaggctacagctccggcaaccaccaacactgtaagcaactcggaaccttctct |
53120478 |
T |
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| Q |
102 |
ctcaactcatcgtgccagcgtcgtcactatagctgatatttaacaacactgctatttgattgattaaacttaataannnnnnnctacttgattaatttaa |
201 |
Q |
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| T |
53120477 |
ctcaactcatcgtgccagcgtcgtcactatagctgatatttaacaacactgctatttgattgattaaacttaataa-ttttttctacttgattaatttaa |
53120379 |
T |
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| Q |
202 |
tcgcagccatacaccgagaacagacttaagtatcttgcttcacagaagacagaagggaatgatcc |
266 |
Q |
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| T |
53120378 |
tcgcagccatacaccgagaacagacttaagtatcttgcttcacagaagacagaagggaatgatcc |
53120314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 53117149 - 53117112
Alignment:
| Q |
138 |
tatttaacaacactgctatttgattgattaaacttaat |
175 |
Q |
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||||||| |||| ||||||||||||||||||||||||| |
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| T |
53117149 |
tatttaaaaacaatgctatttgattgattaaacttaat |
53117112 |
T |
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