View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_high_49 (Length: 280)
Name: NF12055_high_49
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 47477933 - 47478045
Alignment:
| Q |
134 |
gacaattgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
233 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477933 |
gacatttgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
47478032 |
T |
|
| Q |
234 |
tttgtgtttgtgt |
246 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47478033 |
tttgtgtttgtgt |
47478045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47477797 - 47477857
Alignment:
| Q |
1 |
aggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477797 |
aggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
47477857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 47487029 - 47487078
Alignment:
| Q |
182 |
acctgaaagccttgggttccaagtgagacatgaggaattagttcagtttg |
231 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
47487029 |
acctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttg |
47487078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47474305 - 47474365
Alignment:
| Q |
1 |
aggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
61 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||||| ||||| || ||||||||| |
|
|
| T |
47474305 |
aggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaattttgaaacc |
47474365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University