View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_high_54 (Length: 266)

Name: NF12055_high_54
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_high_54
NF12055_high_54
[»] chr1 (10 HSPs)
chr1 (16-256)||(32617716-32617954)
chr1 (49-231)||(12990144-12990327)
chr1 (106-232)||(9457446-9457572)
chr1 (106-232)||(9461543-9461669)
chr1 (48-106)||(9457550-9457608)
chr1 (48-106)||(9461647-9461705)
chr1 (81-231)||(14081915-14082056)
chr1 (112-158)||(24700017-24700063)
chr1 (131-167)||(26828291-26828327)
chr1 (178-218)||(29112286-29112326)
[»] chr4 (6 HSPs)
chr4 (49-232)||(28146787-28146973)
chr4 (50-232)||(25967801-25967987)
chr4 (48-232)||(55606424-55606598)
chr4 (56-233)||(38412055-38412228)
chr4 (56-231)||(11440396-11440572)
chr4 (75-168)||(30839719-30839812)
[»] chr6 (3 HSPs)
chr6 (47-232)||(8169126-8169310)
chr6 (56-156)||(32296248-32296347)
chr6 (158-225)||(10117016-10117084)
[»] chr5 (5 HSPs)
chr5 (48-232)||(41283294-41283478)
chr5 (46-232)||(19967312-19967499)
chr5 (50-232)||(36491303-36491484)
chr5 (82-232)||(39426464-39426611)
chr5 (158-232)||(13424880-13424954)
[»] chr7 (6 HSPs)
chr7 (43-209)||(25636077-25636242)
chr7 (158-229)||(47363960-47364030)
chr7 (56-190)||(10493595-10493730)
chr7 (48-232)||(33048927-33049108)
chr7 (46-106)||(47363880-47363940)
chr7 (187-232)||(10493752-10493797)
[»] chr8 (5 HSPs)
chr8 (86-232)||(10473844-10473993)
chr8 (120-230)||(23490199-23490309)
chr8 (82-232)||(14867472-14867618)
chr8 (56-142)||(45191729-45191814)
chr8 (131-188)||(773692-773749)
[»] chr2 (7 HSPs)
chr2 (106-232)||(17989203-17989329)
chr2 (143-232)||(35016661-35016750)
chr2 (171-232)||(20929784-20929845)
chr2 (111-156)||(5428525-5428570)
chr2 (49-106)||(17989168-17989225)
chr2 (179-232)||(19263584-19263637)
chr2 (49-142)||(19263669-19263762)
[»] chr3 (4 HSPs)
chr3 (58-233)||(7298925-7299088)
chr3 (16-158)||(11783554-11783694)
chr3 (185-229)||(27488516-27488560)
chr3 (131-195)||(50263005-50263069)
[»] scaffold0989 (1 HSPs)
scaffold0989 (149-230)||(2084-2165)
[»] scaffold0006 (1 HSPs)
scaffold0006 (177-218)||(75218-75259)
[»] scaffold0783 (1 HSPs)
scaffold0783 (177-217)||(1914-1954)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 32617716 - 32617954
Alignment:
Q  16 attttcatctatctcaattgnnnnnnntacccggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaa 115  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  32617716 attttcatctatctcaattgaaaaaa-tacccggattctatgtctattgtcatgaactgcatttctttg-ggccgtaacggtgtttcgtcgcggctgtaa 32617813  T
Q  116 cggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacgg 215  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| |    
T  32617814 caacgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacgtccgctacctatacctttttgtggcggcctttttctcggtaaccg 32617913  T
Q  216 accgttttttaaaacctccaactattcaaactctcattcat 256  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32617914 accgttttttaaaacctccaactattcaaactctcattcat 32617954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 231
Target Start/End: Complemental strand, 12990327 - 12990144
Alignment:
Q  49 gattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctata 148  Q
    |||||||||||||||||||| |||  || || |||| ||| |||||||  ||||||||| |||||||||  ||||||| || |||||||||||||| |||    
T  12990327 gattctatgtctattgtcataaacgacaattttttgtggctgtaacggtatttcgtcgcagctgtaacgatgtttcgttgtgatttttgttcactccata 12990228  T
Q  149 aaaacggtgaaaaa-cggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacc 231  Q
    |||||||| ||||| ||||||| ||| |||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  12990227 aaaacggtcaaaaaacggtaacgtccactacctatacctttttatcgcagcctttttctcggtaacgaaccgttttttaaaacc 12990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 9457572 - 9457446
Alignment:
Q  106 gcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttc 205  Q
    |||||||||||||||||||||||| |||||||||||||||  ||   ||||||||||||| ||| |||||| |||||||||||||||||||||||||| |    
T  9457572 gcggctgtaacggcgtttcgtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttac 9457473  T
Q  206 tcggcaacggaccgttttttaaaacct 232  Q
    |||| |||| ||| |||||||||||||    
T  9457472 tcggtaacgaaccattttttaaaacct 9457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 9461669 - 9461543
Alignment:
Q  106 gcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttc 205  Q
    |||||||||||||||||||||||| |||||||||||||||  ||   ||||||||||||| ||| |||||| |||||||||||||||||||||||||| |    
T  9461669 gcggctgtaacggcgtttcgtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttac 9461570  T
Q  206 tcggcaacggaccgttttttaaaacct 232  Q
    |||| |||| ||| |||||||||||||    
T  9461569 tcggtaacgaaccattttttaaaacct 9461543  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 9457608 - 9457550
Alignment:
Q  48 ggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcg 106  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  9457608 ggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgtcg 9457550  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 9461705 - 9461647
Alignment:
Q  48 ggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcg 106  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  9461705 ggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgtcg 9461647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 14081915 - 14082056
Alignment:
Q  81 tttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacct 180  Q
    |||||||||||||||| ||||| || || ||||||| |||||||||||| |||||| ||||||||||| ||||||         || || |   ||||||    
T  14081915 tttgcggccgtaacggtgtttcatcacgactgtaacagcgtttcgtcgtgatttttattcactctatagaaacgg---------gtgacgttgactacct 14082005  T
Q  181 atacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacc 231  Q
    |||| ||||||||| |||| |||||| || ||| |||||||||||||||||    
T  14082006 atacttttttgtcgaggccattttcttggtaactgaccgttttttaaaacc 14082056  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 24700017 - 24700063
Alignment:
Q  112 gtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtga 158  Q
    ||||||| |||||||||| ||||||||||||||| ||||||| ||||    
T  24700017 gtaacggtgtttcgtcgtgatttttgttcactctgtaaaaacagtga 24700063  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 26828327 - 26828291
Alignment:
Q  131 atttttgttcactctataaaaacggtgaaaaacggta 167  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  26828327 atttttgttcactatattaaaacggtgaaaaacggta 26828291  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 29112326 - 29112286
Alignment:
Q  178 cctatacctttttgtcgcggcctttttctcggcaacggacc 218  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  29112326 cctatacctttttgtcgcggccgttttcgcggtaacggacc 29112286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 28146973 - 28146787
Alignment:
Q  49 gattctatgtctattgtcatgaactgcatttcttt---gcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactct 145  Q
    |||||||||||||||||||||||| || ||| |||   ||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||||    
T  28146973 gattctatgtctattgtcatgaacggccttttttttttgcggccgtaacggtgtttcgtcgcagctgtaacgacgttttgtcgtgatttttgttcactct 28146874  T
Q  146 ataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
     ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||    
T  28146873 gtaaaaacggtgaaaaacggtaatgtccgctacctatacctttttgttgcggcctttttctccgtaacagaccgttttttaaaacct 28146787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 25967987 - 25967801
Alignment:
Q  50 attctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctata- 148  Q
    ||||||||||| ||||||||||  ||| || ||||| |||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||| ||     
T  25967987 attctatgtctgttgtcatgaatggcaattttttgcagccgtaacggtgtttcgtcgcggttgtaacggcatttcgtcgtgatttttgttcactctgtat 25967888  T
Q  149 ---aaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
       ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||| | |||||||||||    
T  25967887 gtaaaaacggtggaaaacggtaacgtccgctacctatacctttttgtcgcagccttattctcggtaacggaccatattttaaaacct 25967801  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 55606424 - 55606598
Alignment:
Q  48 ggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctat 147  Q
    |||||| |||||||||||||||||| | |||| |||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||        
T  55606424 ggattccatgtctattgtcatgaacagaatttttttgcggccgtaacggtgtttcatcgcggctgtaacggtgtttcgtcgtgatttttgttcact---- 55606519  T
Q  148 aaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
         | ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||    
T  55606520 -----cagtgaaaaacggtaacgtccactacctatacctttttgtcg-ggcctttttctcggtaacggactgttttttagaacct 55606598  T

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Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 38412055 - 38412228
Alignment:
Q  56 tgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacgg 155  Q
    |||||||||||||||||  ||||  ||||||||||||| || ||||||||||||||||||| |||||||||| | ||||||||||||||| | |||||||    
T  38412055 tgtctattgtcatgaacgacattcttttgcggccgtaatggtgtttcgtcgcggctgtaacagcgtttcgtcttgatttttgttcactctgtgaaaacgg 38412154  T
Q  156 tgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacctc 233  Q
    |   || ||||||| || |||||||||| ||||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  38412155 t---aaccggtaacgtcggctacctata-ctttttgtcgccgcctttttctcggtaatggaccattttttaaaacctc 38412228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 11440572 - 11440396
Alignment:
Q  56 tgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacgg 155  Q
    ||||||||||||||||   ||||| |||| ||  ||||||| ||||| ||| |||||||| ||| ||||||||||| ||||||||||| | ||||||| |    
T  11440572 tgtctattgtcatgaatgacatttttttgtggttgtaacggtgtttcatcgaggctgtaatggcttttcgtcgtaacttttgttcactgtgtaaaaacag 11440473  T
Q  156 tgaaaaa-cggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacc 231  Q
    | ||||| || ||| |||  ||||||||||||||||| ||||||||||||||||  ||  |||||||||||||||||    
T  11440472 taaaaaatcgataatatcgactacctatacctttttgccgcggcctttttctcgataaaagaccgttttttaaaacc 11440396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 30839719 - 30839812
Alignment:
Q  75 catttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaa 168  Q
    ||||| ||||||||| |||  || |||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||| |||||||| ||||    
T  30839719 catttttttgcggccataatagcatttcgtcgtggctgtaacggtgtttcatcgtgatttttgttcactctataaaaacgatgaaaaacagtaa 30839812  T

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Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 232
Target Start/End: Original strand, 8169126 - 8169310
Alignment:
Q  47 cggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactcta 146  Q
    |||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||     
T  8169126 cggattctatgtctattgtcatgaacggcatttttttgtggccgtaacggtgtttcgtcgcggctgtaacgacgtttcgtcgtgatttttgttcactctg 8169225  T
Q  147 taaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    ||||||  ||||||||||||||| ||  ||||||||||| |||||||| | |||||||||||| ||||| | ||||||||||||||    
T  8169226 taaaaatagtgaaaaacggtaacgtcgactacctatacc-ttttgtcgtgacctttttctcggtaacgggcagttttttaaaacct 8169310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 32296347 - 32296248
Alignment:
Q  56 tgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacgg 155  Q
    ||||||||||||||||| |||||| |||| |||||||||   |||||||| ||||  |||||| ||||| |||| ||||||||||||||| |||||||||    
T  32296347 tgtctattgtcatgaaccgcattt-tttgtggccgtaacaatgtttcgtcacggcgataacggtgtttcatcgtgatttttgttcactctgtaaaaacgg 32296249  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 10117084 - 10117016
Alignment:
Q  158 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttt-tctcggcaacggaccgtttttt 225  Q
    |||||||||||  || ||||||||||||| ||||||| |||||||| |||||| ||| ||| |||||||    
T  10117084 aaaaacggtaatgtcggctacctatacctctttgtcgtggccttttctctcggtaacagactgtttttt 10117016  T

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Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 41283478 - 41283294
Alignment:
Q  48 ggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctat 147  Q
    ||||| ||||||||||||||||| |  || || |||||||||||||||  ||||||| | || ||||||||| ||||| ||| ||||||||||||||| |    
T  41283478 ggattttatgtctattgtcatgagcgacaattttttgcggccgtaacgatgtttcgttgtggttgtaacggcttttcgacgtgatttttgttcactctgt 41283379  T
Q  148 aaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||  | ||||||||||||||||||||||    
T  41283378 aaaaacggtgaaaaacggtaacgtccgctacctatacttttttgtcacgacctttttcttagtaacggaccgttttttaaaacct 41283294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 19967499 - 19967312
Alignment:
Q  46 ccggattctatgtctattgtcatgaactgcatttcttt-gcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactc 144  Q
    ||||||||||||||| ||||| |||||  ||||| ||| ||||||||||| | ||||||||  ||||||||||||||||| |||  ||||||||||||||    
T  19967499 ccggattctatgtctgttgtcgtgaacaacattttttttgcggccgtaacagtgtttcgtcatggctgtaacggcgtttcctcgagatttttgttcactc 19967400  T
Q  145 tataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    | ||||||||||||||||||||||| || ||||||| |||||||||| || |||||||||||||| || |||| ||||||||||||||    
T  19967399 tgtaaaaacggtgaaaaacggtaacttcggctacctgtacctttttgccgtggcctttttctcggtaatggactgttttttaaaacct 19967312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 36491484 - 36491303
Alignment:
Q  50 attctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataa 149  Q
    |||||||| | |||||||| |||  |||||||| ||||||| || || ||||| |||| | || |||| |||||||| || |||||||||||||||||||    
T  36491484 attctatgacaattgtcataaacgacatttctt-gcggccgcaatggtgtttcatcgcagttgaaacgacgtttcgttgtgatttttgttcactctataa 36491386  T
Q  150 aaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    ||||||| ||||||| ||||||| |||||||||||||| ||||| |||  |||||| ||  ||| | || |||||||||||||    
T  36491385 aaacggtaaaaaacgataacatcggctacctataccttattgtcacggaatttttcccgataacagcccattttttaaaacct 36491303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 39426464 - 39426611
Alignment:
Q  82 ttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctaccta 181  Q
    ||||||||||||||| |||| ||| ||||||||||||| ||||||    || |||||||||| | ||||||| || |||||| | |||||  |||||  |    
T  39426464 ttgcggccgtaacggtgttttgtcacggctgtaacggcatttcgtg---atctttgttcactttgtaaaaactgtaaaaaacagcaacattggctactaa 39426560  T
Q  182 tacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    ||||||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  39426561 tacctttttgttgcggcctttttctcggtaacagactgttttttaaaacct 39426611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 13424880 - 13424954
Alignment:
Q  158 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    |||||| |||||||| ||||||||||||||||| |||||| ||||||||||| || ||||| | |||||||||||    
T  13424880 aaaaacagtaacatcggctacctatacctttttttcgcggtctttttctcggtaatggaccatattttaaaacct 13424954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 25636077 - 25636242
Alignment:
Q  43 tacccggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcac 142  Q
    |||||||||| | ||| |||||||||||||  ||||| ||| |||||||||||| ||||||| |||||| | | ||| ||| ||||| ||||||||||||    
T  25636077 tacccggattatgtgtttattgtcatgaacgacattt-tttacggccgtaacggtgtttcgttgcggctattatggcttttggtcgtgatttttgttcac 25636175  T
Q  143 tctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgg 209  Q
    | | || |||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||    
T  25636176 tatgtagaaacggtgaaaaacagtagcatcatctacctatacctttttgtcgcggcctttttctcgg 25636242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 47363960 - 47364030
Alignment:
Q  158 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaa 229  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||    
T  47363960 aaaaacggtaacgtccgctacctatac-tttttgtggtggcctttttctcggtaacggaccgttttttaaaa 47364030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 10493595 - 10493730
Alignment:
Q  56 tgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacgg 155  Q
    |||||||||| |||||  |||||| | ||||||| |||||| |||| ||||||||||| | | ||||| ||||| ||||||| ||||||  || |||| |    
T  10493595 tgtctattgttatgaatggcattt-tatgcggccttaacggtgttttgtcgcggctgttaggacgttttgtcgtgatttttggtcactccgtacaaacag 10493693  T
Q  156 tgaaaa--acggtaacatccgctacctataccttttt 190  Q
    ||||||  ||||||||||  |||| ||||||||||||    
T  10493694 tgaaaaacacggtaacataggctagctataccttttt 10493730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 33049108 - 33048927
Alignment:
Q  48 ggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctat 147  Q
    ||||||| |||||||||||||||||  |||||  ||| ||| | ||||| ||||| ||||| |||||||||||||| |||||||      |||||||||     
T  33049108 ggattctctgtctattgtcatgaacaacattttgttgtggctgcaacggtgtttcctcgcgactgtaacggcgttt-gtcgtaaaaaaaattcactcta- 33049011  T
Q  148 aaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
     |||||||  ||||| |||||      || | |||| ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  33049010 -aaaacggcaaaaaatggtaatcgtgactgcttatatctttttgtcgcggcctttttctcggtaccagaccgttttttaaaacct 33048927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 47363880 - 47363940
Alignment:
Q  46 ccggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcg 106  Q
    ||||||||||||||||||||||||||| ||| || ||||||| |||| ||| |||||||||    
T  47363880 ccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttcgtcg 47363940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 10493752 - 10493797
Alignment:
Q  187 ttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    |||||||||||| |||||||| | ||||||||| ||||||||||||    
T  10493752 ttttgtcgcggcttttttctcagtaacggaccgatttttaaaacct 10493797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 10473844 - 10473993
Alignment:
Q  86 ggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctat--- 182  Q
    ||||||||| | |||||||||| ||||||| | ||||||||||| ||||||||||||||| ||||||| ||||||||| ||||  || |||||||||       
T  10473844 ggccgtaacagtgtttcgtcgcagctgtaatgtcgtttcgtcgtgatttttgttcactctgtaaaaacagtgaaaaacagtaatgtcggctacctatacc 10473943  T
Q  183 acctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    ||||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  10473944 acctttttgtcacggcctttttctcagtaacggaccgtattttaaaacct 10473993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 23490199 - 23490309
Alignment:
Q  120 gtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccg 219  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| |||||| || |||||||||||||||||||||||||||||||||| | ||||||| |    
T  23490199 gtttcgtcgtgatttttgttcactctgtaaaaatggtgaaaaatggtaacttcggctacctatacctttttgtcgcggcctttttctcagtaacggacgg 23490298  T
Q  220 ttttttaaaac 230  Q
    || ||||||||    
T  23490299 ttctttaaaac 23490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 14867472 - 14867618
Alignment:
Q  82 ttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctaccta 181  Q
    ||||||| ||||||| ||||||| ||||| |||| ||||| ||||||| |||||| ||||||||| ||||  ||   |||| ||||||  | ||||||||    
T  14867472 ttgcggctgtaacggtgtttcgttgcggccgtaatggcgtctcgtcgtgattttt-ttcactctaaaaaagggg---aaaatggtaaccgcagctaccta 14867567  T
Q  182 tacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    || |||| |||||||||||||||||| | ||||||||||||||||||||||    
T  14867568 tatctttctgtcgcggcctttttctcagtaacggaccgttttttaaaacct 14867618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 45191729 - 45191814
Alignment:
Q  56 tgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcac 142  Q
    |||| ||||||||||||  ||||| || ||||||||||||| ||||||||||| |||||| | ||||||||||| ||||||||||||    
T  45191729 tgtccattgtcatgaacgacattt-ttggcggccgtaacggtgtttcgtcgcgactgtaatgacgtttcgtcgtgatttttgttcac 45191814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 773749 - 773692
Alignment:
Q  131 atttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctataccttt 188  Q
    ||||||||||||||| | ||||| | ||||||||||| ||||| | ||||||||||||    
T  773749 atttttgttcactctgttaaaacagagaaaaacggtatcatccaccacctataccttt 773692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 17989203 - 17989329
Alignment:
Q  106 gcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttc 205  Q
    ||||| ||||||| |||||||||| |||||||||||||   ||||||||||||||||||||||  | |||||||||||||||||||| | |||||||| |    
T  17989203 gcggccgtaacggtgtttcgtcgtgatttttgttcacttagtaaaaacggtgaaaaacggtaatgttcgctacctatacctttttgttgtggccttttcc 17989302  T
Q  206 tcggcaacggaccgttttttaaaacct 232  Q
    | || |||||||| |||||||||||||    
T  17989303 ttggtaacggaccattttttaaaacct 17989329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 35016661 - 35016750
Alignment:
Q  143 tctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  35016661 tctataaaaacagtgaagaacggcaacattcgctacctatacctttttgtcgcggccattttctcgataacggacggttttttaaaacct 35016750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 20929845 - 20929784
Alignment:
Q  171 tccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    ||||||||||||||||||||| |||| ||||||||| || ||||||| ||||||||||||||    
T  20929845 tccgctacctatacctttttggcgcgacctttttcttggtaacggactgttttttaaaacct 20929784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 5428570 - 5428525
Alignment:
Q  111 tgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggt 156  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||    
T  5428570 tgtaacggtgtttcgtcgtgatttttgttcactctgtaaaaacggt 5428525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 17989168 - 17989225
Alignment:
Q  49 gattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcg 106  Q
    ||||||||||||||| |||||||| ||  || |||||||||||||||| |||||||||    
T  17989168 gattctatgtctattatcatgaacggctgttttttgcggccgtaacggtgtttcgtcg 17989225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 19263637 - 19263584
Alignment:
Q  179 ctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacct 232  Q
    |||||||||||| |||||| ||||||||||  |||||||| |||||||||||||    
T  19263637 ctatacctttttatcgcggtctttttctcgataacggaccattttttaaaacct 19263584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 19263762 - 19263669
Alignment:
Q  49 gattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcac 142  Q
    |||||||| |||||||||||||||  || || |||||||||||||||| ||||  | | |||| ||| | ||||||||| | ||||||||||||    
T  19263762 gattctatatctattgtcatgaacgacagttttttgcggccgtaacggtgtttaattgtggctataatgacgtttcgtcatgatttttgttcac 19263669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 7299088 - 7298925
Alignment:
Q  58 tctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaacggcgtttcgtcgtaatttttgttcactctataaaaacggtg 157  Q
    |||| |||||||||| |||||| ||||||||||||| ||  ||||||||| ||||||||| |||||||| || ||||||||||||| | ||||| ||||     
T  7299088 tctagtgtcatgaacggcattt-tttgcggccgtaaaggtctttcgtcgcagctgtaacgccgtttcgttgtgatttttgttcactttgtaaaagcggt- 7298991  T
Q  158 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaacctc 233  Q
             ||| || |||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  7298990 ---------aacgtcggctaccgatac-tttttgtcgcggcctttttctcggtaacggaccgttttttaaaacctc 7298925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 11783554 - 11783694
Alignment:
Q  16 attttcatctatctcaattgnnnnnnntacccggattctatgtctattgtcatgaactgcatttctttgcggccgtaacggcgtttcgtcgcggctgtaa 115  Q
    ||||||||||||||||||||       || ||||| ||||| ||||||| ||||||  ||||||  ||||||||||||| | |||||||||| |||||||    
T  11783554 attttcatctatctcaattgaaaaaaatatccggagtctatttctattgccatgaaaggcattt--ttgcggccgtaacagtgtttcgtcgcagctgtaa 11783651  T
Q  116 cggcgtttcgtcgtaatttttgttcactctataaaaacggtga 158  Q
    ||| |||||||| | | ||||||| | ||||||||||||||||    
T  11783652 cggagtttcgtcatgaattttgtttagtctataaaaacggtga 11783694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 27488560 - 27488516
Alignment:
Q  185 ctttttgtcgcggcctttttctcggcaacggaccgttttttaaaa 229  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||    
T  27488560 ctttttgtcgcggcctttttctctgtaacgaaccgttttttaaaa 27488516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 50263005 - 50263069
Alignment:
Q  131 atttttgttcactctataaaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgc 195  Q
    ||||||||||||||  | ||||| | ||||||||||| ||||| | |||||||||||| ||||||    
T  50263005 atttttgttcactccgttaaaacagagaaaaacggtatcatccaccacctatacctttatgtcgc 50263069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 2084 - 2165
Alignment:
Q  149 aaaacggtgaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcggcaacggaccgttttttaaaac 230  Q
    |||||||| |||||||||||| ||||||| |  || ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2084 aaaacggtaaaaaacggtaacgtccgctatcattaactttttgtcgcggcctttttctcggtaacagaccgttttttaaaac 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 75259 - 75218
Alignment:
Q  177 acctatacctttttgtcgcggcctttttctcggcaacggacc 218  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  75259 acctatacctttttgtcgcggccgttttcgcggtaacggacc 75218  T

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Target: scaffold0783 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 1954 - 1914
Alignment:
Q  177 acctatacctttttgtcgcggcctttttctcggcaacggac 217  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  1954 acctatacctttttgtcgcggccgttttcgcggtaacggac 1914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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