View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_high_6 (Length: 842)
Name: NF12055_high_6
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 675; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 16 - 825
Target Start/End: Original strand, 2928169 - 2928977
Alignment:
| Q |
16 |
agcacagaaaaaagccataccagatcattgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggctactgatc |
115 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2928169 |
agcacagaaaaaagccataccagatcactgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggccactgatc |
2928268 |
T |
|
| Q |
116 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928269 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
2928368 |
T |
|
| Q |
216 |
tctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacactt |
315 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928369 |
tctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacactt |
2928468 |
T |
|
| Q |
316 |
ttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacac |
415 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2928469 |
ttttcataatcaatggtgacaaat-----aagcatcctatgtatagcataaaaccacaagttctttgttacctgttcaacaaagtgtcgagcaacaacac |
2928563 |
T |
|
| Q |
416 |
gcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacctatacatatta |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928564 |
gcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagaccta--------- |
2928654 |
T |
|
| Q |
516 |
aatcctagagttaaattacggtccacaactgcaagtgcggtc---------------ataattttttacaaaaacatcacaaccgcaattgactacattt |
600 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928655 |
---cctagaattaaattacggtccacaactgcaagtgcggtcataatataaaatattataattttttacaaaaacatcacaaccgcaattgactacattt |
2928751 |
T |
|
| Q |
601 |
acctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagac |
700 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928752 |
acctgcattttagtataatgtcaagagtcacaatgaattcgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagac |
2928851 |
T |
|
| Q |
701 |
aaaac-aaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttccca |
799 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928852 |
aaaacaaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttccca |
2928951 |
T |
|
| Q |
800 |
ttgggaaaacatccgacagacatatt |
825 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
2928952 |
ttgggaaaacatccgacagacatatt |
2928977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 499 - 811
Target Start/End: Complemental strand, 2310397 - 2310075
Alignment:
| Q |
499 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtcataat----------tttttacaaaaacatcacaaccgcaa |
588 |
Q |
| |
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||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| |||| ||| ||| ||||||||| |||||||||||| |
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| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
|
| Q |
589 |
ttgactacatttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaac |
688 |
Q |
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||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2310297 |
ttgactacatttacctgaattttagtgtaatatcaagagttacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaac |
2310198 |
T |
|
| Q |
689 |
aaagagttagacaaaacaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaa |
788 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| |
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| T |
2310197 |
aaagagttagacaaaacaaaatcataaaatacctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagac |
2310098 |
T |
|
| Q |
789 |
ctatcttcccattgggaaaacat |
811 |
Q |
| |
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||||||||||||| | ||||||| |
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| T |
2310097 |
ctatcttcccattagcaaaacat |
2310075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 215 - 491
Target Start/End: Complemental strand, 2310703 - 2310431
Alignment:
| Q |
215 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacact |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || || ||||||| ||| || |
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| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggtagtcgatcgataagtggtgacaatct |
2310604 |
T |
|
| Q |
315 |
tttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaaca |
414 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
2310603 |
tttttcaaaatcaatggtgacaaatatctcaagcatcctatgtatagcataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaaca |
2310504 |
T |
|
| Q |
415 |
cgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagt |
491 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
2310503 |
tgcgcaacctaattaacacgaaaaccaacataaactgattagtctctattat----cattagctgaaattagcaagt |
2310431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 2310985 - 2310927
Alignment:
| Q |
126 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
184 |
Q |
| |
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|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2310985 |
ctataaggaagaataattaacataaacagagccattgctcataaattcttaaaatattt |
2310927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
715 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
757 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 757
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
715 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
757 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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