View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_11 (Length: 721)
Name: NF12055_low_11
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Original strand, 43102438 - 43103141
Alignment:
| Q |
1 |
tgaagaggttggaggctgcagaggcagctggaactccggtgaaaccgaagtgaaagacaaacaagtaatttagaggaagatggaggagagtgccagcaag |
100 |
Q |
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| T |
43102438 |
tgaagaggttggaggctgcagaggcagctgggactccggtgaaaccgaagtgaaagacaaacaagtaatttagaggaagatggaggagagtgccagcaag |
43102537 |
T |
|
| Q |
101 |
tgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtatagggtggatgaatgaatttgtgatgagatcagggagagagaatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102538 |
tgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtatagggtggatgaatgaatttgtgatgagatcagggagagagaatatt |
43102637 |
T |
|
| Q |
201 |
agatatgtgtgagccatggctgtgatctttgggttctggtgcaaccaaatgaggatttgtgacatgttaagccacatgaaggaaatgggaatggaacata |
300 |
Q |
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| T |
43102638 |
agatatgtgtgagccatggctgtgatctttgggttctggtgcaaccaaatgaggatttgtgacatgttaagccacatgaaggaaatgggaatggaacata |
43102737 |
T |
|
| Q |
301 |
gtaataggaagaggatgcaacgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacaaagaggttccattccgagagagag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43102738 |
gtaataggaagaggatgcaacgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacagagaggttccattccgagagagag |
43102837 |
T |
|
| Q |
401 |
accggagagaactgagtagccggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttcaagttctcctaggtagcctaaaaacatcatggac |
500 |
Q |
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| T |
43102838 |
accggagagaactgagtagccggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttcaagttctcctaggtagcctaaaaacatcatggac |
43102937 |
T |
|
| Q |
501 |
accatggaacgagagtagaaaataagagctgttatggctattggaaaagcaagcatcattagggatttcatttcttccatgatggttgaaaaggaacatg |
600 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102938 |
accatggaacgagaatagaaaataagagctgttatggctattggaaaagcaagcatcattagggatttcatttcttccatgatggttgaaaaggaacatg |
43103037 |
T |
|
| Q |
601 |
tatttggtttggtgtagtcacttaccaaatgcacttgctccatgattatgtttgtcttgttaggggaagaagac-aatatgattttaaatggaggtggtg |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43103038 |
tatttggtttggtgtagtcacttaccaaatgcacttgctccatgattatgtttgtcttgttaggggaagaagacaaatatgattttaaatggaggtggtg |
43103137 |
T |
|
| Q |
700 |
gatg |
703 |
Q |
| |
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|||| |
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| T |
43103138 |
gatg |
43103141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 321 - 466
Target Start/End: Complemental strand, 33948749 - 33948604
Alignment:
| Q |
321 |
cgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacaaagaggttccattccgagagagagaccggagagaactgagtagc |
420 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| || || |||||||| ||||||||||||||||| || | ||| | ||| || |||||||| || | |
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| T |
33948749 |
cgttgaagtgttaatgatagaagttttggacggttagcaccaaaggcttgagaacaaagaggttccatacctaaagataaaccagaaagaactgaataac |
33948650 |
T |
|
| Q |
421 |
cggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttc |
466 |
Q |
| |
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|||| ||||| || || || ||||| | |||||| | ||||||||| |
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|
| T |
33948649 |
cggttatgtttgcaaaagctatggctaatgaacctgatgcaagttc |
33948604 |
T |
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