View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_12 (Length: 699)
Name: NF12055_low_12
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 360 - 699
Target Start/End: Complemental strand, 36733339 - 36733021
Alignment:
| Q |
360 |
tataaagattgtggcatgtaggaaaggaaatacaaatatgaaagaaggagagtgagagaagaggtagatattacgatgaaaaatcatgtagaaattccaa |
459 |
Q |
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| T |
36733339 |
tataaagattgtggcatgtaggaaaggaaatacaaatatgaaagaaggagagtgagagaagaggtagatattacgatgaaaaatcatgtagaaattccaa |
36733240 |
T |
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| Q |
460 |
gcaaaaagagtttatcttctttcatgttttaatcaggtttgcataattttatggattctttcgaggaattattgtttagtgaacataacccaaaaacttc |
559 |
Q |
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| T |
36733239 |
gcaaaaagagtttatcttctttcatgttttaatcaggtttacataattttatggattctttcgaggaattgttgtttagtgaacataac----------- |
36733151 |
T |
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| Q |
560 |
tttcaagcttccattggtcttgttccgagagattccttaaaatatttttgtaatcctataatgtttccaagatattcaataatttagatgttaaatctca |
659 |
Q |
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| T |
36733150 |
----------ccattggtcttgttccgagagattccttaaaatatttttgtaatcctataatgtttccaagatattcaataatttagatgttaaatctca |
36733061 |
T |
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| Q |
660 |
tagtaaggtttttcagaagagtaatgatacatagacaccc |
699 |
Q |
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| T |
36733060 |
tagtaaggtttttcagaagagtaatgatacatagacaccc |
36733021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 36733684 - 36733390
Alignment:
| Q |
15 |
cattattttgagcagtacnnnnnnnncttagcttttcttgcttatcttttaaattctattgaagttttacctatagttttggttctttctttggacttct |
114 |
Q |
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| T |
36733684 |
cattattttgagcagtacttttttttcttagcttttcttgcttatcttttaaattatattgaagttttacctatagttttggttctttctttggacttct |
36733585 |
T |
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| Q |
115 |
gagtggtaaatcttatgatgaccttcatatatacttgcaagattcttgaaacacgagagacatattcaagagtgtaaacacttactgagtggagatatcc |
214 |
Q |
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| T |
36733584 |
gagtggtaaatcttatgatgaccttcatatatacttgcaagattcttgaaacacgagagacatattcaagagtgtaaacacttactgagtggagatatcc |
36733485 |
T |
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| Q |
215 |
tttttgttttcttgnnnnnnnnnataacttgtttcaaaagtatggaagtgaacgaaagtaggtatacaaatgagatatgacatatatcttataat |
309 |
Q |
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| T |
36733484 |
tttttgttctcttgtttttttttataacttgtttcaaaagtatggaagtgaacgaaagtagggatacaaatgagatatgacatgtatcttataat |
36733390 |
T |
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