View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_14 (Length: 684)
Name: NF12055_low_14
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 30402716 - 30402858
Alignment:
| Q |
69 |
atatatgccttgtagagtataatgatggagacagcgtgcgagttctgccttgcaatcatgaatttcatagaacatgcatagacaaatcgttgaaggagat |
168 |
Q |
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| T |
30402716 |
atatatgccttgtagagtataatgatggagacagcgtgcgtgttctgccttgcaatcatgaatttcatagaacatgcatagacaaatggttgaaggagat |
30402815 |
T |
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| Q |
169 |
tcacaggtatgagaaaatacatatccagatttcgttcttgttt |
211 |
Q |
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| T |
30402816 |
tcacaggtatgagaaaatagatatccagatttccttcttgttt |
30402858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 493 - 664
Target Start/End: Original strand, 30402858 - 30403036
Alignment:
| Q |
493 |
tctatcactagagttacccatttgcaccatttc--tccaatacaaaagacctcaaacatatccatattacctgtacgtatga-----ggaaccagagatg |
585 |
Q |
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| T |
30402858 |
tctatcactagagttacacatttgcaccatttccctccaatacagaagatctgaaacatatccatattacctgtacatatgatacgaggaaccagagatg |
30402957 |
T |
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| Q |
586 |
catgcacatctgcataaaataacttcgaaagcaaaaaatttatagcatacatattttcaatcatgggacacctaccccc |
664 |
Q |
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| T |
30402958 |
cacgcgcatctgcataaaataacttcaaaagcaaaaaatttatagcgtacatattttcaatcatgggacacctaccccc |
30403036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 10784077 - 10783967
Alignment:
| Q |
69 |
atatatgccttgtagagtataatgatggagacagcgtgcgagttctgccttgcaatcatgaatttcatagaacatgcatagacaaatcgttgaaggagat |
168 |
Q |
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||||||||||||| ||||| | |||||||||||| ||||||| || ||||| ||||||||||||||| |||||| |||||||| | | |||| ||| | |
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| T |
10784077 |
atatatgccttgtggagtacgaagatggagacagcatgcgagtacttccttgtcatcatgaatttcatacaacatgtatagacaagtggctgaaagaggt |
10783978 |
T |
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| Q |
169 |
tcacaggtatg |
179 |
Q |
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| T |
10783977 |
tcacaggtatg |
10783967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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