View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_low_16 (Length: 624)
Name: NF12055_low_16
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 15 - 617
Target Start/End: Complemental strand, 34926909 - 34926307
Alignment:
| Q |
15 |
acaagaaacacccaaaatcggtgagtatgtatattgaatattagaactatgttattttttacgaccagtttgcttcacgactgtaagaatcaactgataa |
114 |
Q |
| |
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| T |
34926909 |
acaagaaacacccaaaatcggtgagtatgtatatagaatattagaactatgttattttttacgaccagtttgcttcacgactgtaagaatcaactgataa |
34926810 |
T |
|
| Q |
115 |
catttgattgttactatttgtgccatgcctatttgttacataaatttcagctatgaacattgatcacgatagcatcttaattgttgtataaacattgtag |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926809 |
catttgattgttactatttgtgccatgcctatttgttacataaagtccagctatgaacattgatcacgatagcatcttaattgttgtataaacattgtag |
34926710 |
T |
|
| Q |
215 |
gagaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaaagcagagaaacaagcattattaaatatgacaagatcgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926709 |
gagaaacttgagtatggccaagatctcatggtgcaagctgaaaagacaaacggaattgggaaagcagagaaacaagcattattaaatatgacaagatcgt |
34926610 |
T |
|
| Q |
315 |
cacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagtaacatacttgccattggaggttatcc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926609 |
cacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagtaacatacttgccattggaggttatcc |
34926510 |
T |
|
| Q |
415 |
tggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatccaaagttgattgaaattgcttat |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926509 |
tggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatccaaagttgattgaaattgcttat |
34926410 |
T |
|
| Q |
515 |
tcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacacccctccaattcccatgaatatgactgcttcat |
614 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34926409 |
tcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacacccctccaattcccatgaatatgactgcttctt |
34926310 |
T |
|
| Q |
615 |
ctc |
617 |
Q |
| |
|
||| |
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|
| T |
34926309 |
ctc |
34926307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Complemental strand, 34931823 - 34931212
Alignment:
| Q |
15 |
acaagaaacacccaaaatcggtgagtatgtatattgaatattagaactatgttatttttt-acgaccagtttgcttcacga-ctgtaagaatcaactgat |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| || | || | |||||||||| ||||| |||||| ||||| |
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| T |
34931823 |
acaagaaacacccaaaattggtgagtatgtatattgtatataagaactatgttatttttttacaatcaatgtgcttcacgaactgtacgaatcagctgat |
34931724 |
T |
|
| Q |
113 |
aacatttgattgttactatttgtgccatgcctatttgttacataaa-----tttcagctatgaacattgatcacgatagcatcttaattgttgtataaac |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||| |||||||||||||||||||||||||| |||| |
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|
| T |
34931723 |
aacatttgattgttactatttgtgccatgcctatttgttacataaagcatttctcattaattaacatcaatcacgatagcatcttaattgttgtacaaac |
34931624 |
T |
|
| Q |
208 |
attgtaggagaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaaagcagagaaacaagcattattaaatatgaca |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |
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|
| T |
34931623 |
attgtaggagaaacttgggtatggccaagatgtcatggtgcaagctgaaaagacaaatggaattggtaaagcagaaaaacaagcattattaaacatgaca |
34931524 |
T |
|
| Q |
308 |
agatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagtaacatacttgccattggag |
407 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| | |||||||| | |||||||| ||||||| |
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|
| T |
34931523 |
agatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctatttggtcctttagccatatacttgctattggag |
34931424 |
T |
|
| Q |
408 |
gttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatccaaagttgattgaaat |
507 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
34931423 |
gttatcctggactgagtgttccagcaggatatgaaaagggtcagccatttggaattttctttggaggtttgaaagggtcagagccaaagttgattgaaat |
34931324 |
T |
|
| Q |
508 |
tgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacaccc-ctccaattcccatgaatatgac |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| ||||||||||||||||||| || |
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|
| T |
34931323 |
tgcttattcatttgagcaagcaactttgatcagaaagccacctccctttcggaagttataagtttgattgaacgccctctccaattcccatgaatataac |
34931224 |
T |
|
| Q |
607 |
tgcttcatctca |
618 |
Q |
| |
|
|||||| ||||| |
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|
| T |
34931223 |
tgcttcttctca |
34931212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 177 - 556
Target Start/End: Complemental strand, 34896559 - 34896180
Alignment:
| Q |
177 |
atcacgatagcatcttaattgttgtataaacattgtaggagaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaa |
276 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||| || |
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| T |
34896559 |
atcacgataggatcttaattgttatataaaagttgtaggagaaaatggagtatggccaagatgtcatggtgcaagctgaaaagacaaatggaattggtaa |
34896460 |
T |
|
| Q |
277 |
agcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttg |
376 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| |||| | ||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||| |
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|
| T |
34896459 |
agcagaaaaacaagcattattaaacatgacaagatggtcagaaaatgggtttgagaaactgatgaaaataaataaacttgatgctgtagtaacacctttt |
34896360 |
T |
|
| Q |
377 |
gcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtt |
476 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||| |
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|
| T |
34896359 |
tggtcctttagtcacatacttgctattggaggttatcctggagtgagtgttccagcaggatatgaaaagggtgtgccatttggaatttgctttggtggtt |
34896260 |
T |
|
| Q |
477 |
tgaaaggctcagatccaaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctcccctt |
556 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||||| |
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|
| T |
34896259 |
taaaagggtcagagccaaagttgattgaaattgcttattccttcgagcaagcaactttgatcagaaagtcaccacccctt |
34896180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 192 - 558
Target Start/End: Complemental strand, 34919992 - 34919623
Alignment:
| Q |
192 |
taattgttgtataaacattgtaggagaaacttga---gtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaaagcagagaaaca |
288 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||||| | |
|
|
| T |
34919992 |
taattgttgtataaaaattgtaggaggaacttgataagtatggccaagatatcatgttgcaagctgaaaagacaaatggaattggaagtatacagaaaga |
34919893 |
T |
|
| Q |
289 |
agcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagt |
388 |
Q |
| |
|
|||||||||||| |||||||||| |||| | ||||||||||| |||||||| |||| |||| |||||||||||||||||| ||||| ||||||||||| |
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|
| T |
34919892 |
agcattattaaacatgacaagatggtcagaaaatgggtttgagaaactgataaaaacaaatgaacttgatgctgtggtaacgcctttttcatcctttagt |
34919793 |
T |
|
| Q |
389 |
aacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcag |
488 |
Q |
| |
|
| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34919792 |
agcatacttgctattggaggttatcctggaatcattgttccagcaggatatgaaaagggtaagccatttggaatttgttttggaggtttgaaaggctcag |
34919693 |
T |
|
| Q |
489 |
atccaaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcg |
558 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34919692 |
agccgaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctcctcttcg |
34919623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 173 - 564
Target Start/End: Complemental strand, 34910052 - 34909662
Alignment:
| Q |
173 |
attgatcacgatagcatcttaattgttgtataaacattgtaggagaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattg |
272 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||| ||||||||||||| | ||||||||||||||| | ||| |||||||||||||||||| || ||| |
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|
| T |
34910052 |
attgatcactatagaatctgaattgttgtataaa-attgtaggagaaaatggagtatggccaagatgtattggtgcaagctgaaaagacaaacggttttg |
34909954 |
T |
|
| Q |
273 |
ggaaagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacc |
372 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||| |||||| |||| | ||||||||||| ||||||||||||| |||||||||||||||||| | | ||| |
|
|
| T |
34909953 |
ggaaagcagaaaaagaagcattattgaatatgtcaagatggtcagaaaatgggtttgagaaactgatgaaaataaataaacttgatgctgtaatgacacc |
34909854 |
T |
|
| Q |
373 |
tttggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttgga |
472 |
Q |
| |
|
||| |||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||| |
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|
| T |
34909853 |
tttttggtcctttagccacatactggctattggaggttatcctggagtgagtgttccagcaggatatgaaaagggtgtaccatttggaatttgttttggt |
34909754 |
T |
|
| Q |
473 |
ggtttgaaaggctcagatccaaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagtt |
564 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
34909753 |
ggtttgaaagggtcagagccaaagttgattgaaattgcttattcattcgagcaagcaactttgatcagaaagccacctccccttaggaagtt |
34909662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 335 - 571
Target Start/End: Complemental strand, 34914153 - 34913917
Alignment:
| Q |
335 |
ctgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcag |
434 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
34914153 |
ctgatgaaaataaataaacttgatcctgtggtaacacctttttcattctttagtagcatacttgctattggaggttatcttggagtgattgttccagcag |
34914054 |
T |
|
| Q |
435 |
gatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatccaaagttgattgaaattgcttattcatttgagcaagcaacttt |
534 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34914053 |
gatatgaaaaaggtcagccatttggaatttgctttggaggtttgaaagggtcagagccaaagttgattgagattgcttattcatttgagcaagcaacttt |
34913954 |
T |
|
| Q |
535 |
gatcagaaagccacctccccttcggaagttagaagtt |
571 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
34913953 |
gatcagaaagccaccaccccttaggaagttggaagtt |
34913917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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