View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_low_18 (Length: 569)
Name: NF12055_low_18
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 7333591 - 7333048
Alignment:
| Q |
18 |
gtaatgaggtgatagggagtggagacttatctcgggtaggagtcatagactctggtatttccctttgttaattcttttgttgctgtcagagcttttagct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333591 |
gtaatgaggtgatagggagtggagacttatctcgggtaggagtcatagactctggtatttccctttgttaattcttttgttgctgtcagagcttttagct |
7333492 |
T |
|
| Q |
118 |
catacttccatcaataaaatctctattctactgatacttaagttttcggtttctatcattttctagatatataagaaaaaacaaaattcattttaaagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333491 |
catacttccatcaataaaatctctattctactgatacttaagttttcggtttctatcattttctagatatataagaaaaaacaaaattcattttaaagtt |
7333392 |
T |
|
| Q |
218 |
cggttgtaaaacacgaaacatggtgcatcaatcagaattggtccgaattgggttgattctcaactggtttgatttgatagagttcaacttgcaaaccagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333391 |
cggttgtaaaacacgaaacatggtgcatcaatcagaatcggtccgaattgggttgattctcaactggtttgatttgatagagttcaacttgcaaaccagt |
7333292 |
T |
|
| Q |
318 |
ttggttttccatgctgaactgaaccaaaaccacagttaccgagtaaannnnnnnnnnnnnnnnncttgcccaaactttgaatttactaacataaagttct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333291 |
ttggttttccatgctgaactgaaccaaaaccacagttaccgagtaaatttttcatttattttttcttgcccaaactttgaatttactaacataaagttct |
7333192 |
T |
|
| Q |
418 |
atgcacattcaccttttcctgaagaacctcaccttactatttccaatgttcgtgttcattgctccaaaaagatctgcatgtgtgacactttgtttttagc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333191 |
atgcacattcaccttttcctgaagaacctcaccttactatttccaatgttcgtgttcattgctccaaaaagatctgcatgtgtgacactttgtttttagc |
7333092 |
T |
|
| Q |
518 |
aaatgcacttttctgagtagctaatctagttgtcagttctcatt |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333091 |
aaatgcacttttctgagtagctaatctagttgtcagttctcatt |
7333048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 382 - 502
Target Start/End: Complemental strand, 2643752 - 2643631
Alignment:
| Q |
382 |
cttgcccaaactttgaatttactaacataaagttctatgcacattcaccttttcctgaagaacctcaccttactatttccaatgttcgtgttcattgctc |
481 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||| |
|
|
| T |
2643752 |
cttgcccaaactttgagtttagtaacgtaaagttctatgctcattcaccttttcctgaagaacctcaccctactgttttcaatgttcatgttcattgctc |
2643653 |
T |
|
| Q |
482 |
caaaaaga-tctgcatgtgtga |
502 |
Q |
| |
|
| ||||| ||||||||||||| |
|
|
| T |
2643652 |
cgtaaagattctgcatgtgtga |
2643631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University