View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_2 (Length: 1015)

Name: NF12055_low_2
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_2
NF12055_low_2
[»] chr7 (6 HSPs)
chr7 (328-964)||(24624447-24625069)
chr7 (20-266)||(24625133-24625375)
chr7 (122-189)||(41020506-41020573)
chr7 (959-997)||(24624379-24624417)
chr7 (122-180)||(27093404-27093462)
chr7 (122-180)||(27184839-27184897)
[»] chr5 (1 HSPs)
chr5 (122-187)||(23012392-23012457)
[»] chr4 (4 HSPs)
chr4 (122-169)||(13134460-13134507)
chr4 (122-169)||(40742601-40742648)
chr4 (122-187)||(4781255-4781320)
chr4 (122-159)||(21539879-21539916)
[»] chr2 (3 HSPs)
chr2 (122-185)||(31808087-31808150)
chr2 (122-179)||(37411236-37411293)
chr2 (122-165)||(30527601-30527644)
[»] chr8 (2 HSPs)
chr8 (122-187)||(33405368-33405433)
chr8 (122-185)||(31580113-31580176)
[»] chr6 (3 HSPs)
chr6 (122-187)||(13364689-13364754)
chr6 (119-169)||(17411870-17411920)
chr6 (122-187)||(9658889-9658954)
[»] chr1 (3 HSPs)
chr1 (122-169)||(35999324-35999371)
chr1 (125-186)||(13997896-13997957)
chr1 (117-186)||(21530694-21530763)
[»] scaffold0697 (1 HSPs)
scaffold0697 (117-186)||(1649-1718)
[»] chr3 (1 HSPs)
chr3 (122-171)||(29508454-29508503)


Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 328 - 964
Target Start/End: Complemental strand, 24625069 - 24624447
Alignment:
Q  328 ttgagagagatatgggtgtgagtgtgtgtggttagtggtgatgtgagagatgacgcagagtataggaggttaaatggggtgagtgagattttggtgaggt 427  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  24625069 ttgagagagatatgggtgtgagtgt-tgtggttagtggtgatgtgagagatgacgcagagtataggggattaaatggggtgagtgagattttggtgaggt 24624971  T
Q  428 gtataagtaagaagtgaagtgaacgaaaggtgctctgttttgtataggcattaaaaagttagattcaatgggaaaggttaagattacactttattgatag 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624970 gtataagtaagaagtgaagtgaacgaaaggtgctctgttttgtataggaattaaaaagttagattcaatgggaaaggttaagattacactttattgatag 24624871  T
Q  528 aataaaatctgtgtttagattagggttggttaattgttcttgttaagtgaaaaatttagagacaagacgcaaggttaaagagtttgtgaaattacgtgtg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624870 aataaaatctgtgtttagattagggttggttaattgttcttgttaagtgaaaaatttagagacaagacgcaaggttaaagagtttgtgaaattacgtgtg 24624771  T
Q  628 acctactataagattttggatttaaatacaagttaagattagatccagcagaagctccatctagtatttgttttatggctgtattagattatttttgttt 727  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  24624770 acctactataagattttggatttaaatacaagttaagattagatccagcagaagctccatctagtatttgccttatggctatattagattatttttgttt 24624671  T
Q  728 atcatactcaattcctcataaaattatgtttaatcttgttgaggaaaatccggagcagcaatgagaagatgttcaagaacacaagaaagagatataccac 827  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||    
T  24624670 accatactcaattcctcataaaattatgtttaatcttgttgaggaaaatccggagcagcgacgagacaatgttcaagaacacaagaaagagatataccac 24624571  T
Q  828 ttctccacacaaaattcgagtcttgcatatcatattattgaaccactaaaacaataaatggtatacaccttctgactacaccatcaagaatttttaatac 927  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||             ||||||||||||||||||||||    
T  24624570 ttctccacacaaaatatgagtcttgcatatcatattattgaaccactaaaacaatcaatggtata-------------caccatcaagaatttttaatac 24624484  T
Q  928 caggatctaatagtacacatggatcatacttttgctt 964  Q
     ||||||||||||||||||||||||||||||| ||||    
T  24624483 aaggatctaatagtacacatggatcatactttcgctt 24624447  T

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Target: chr7; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 24625375 - 24625133
Alignment:
Q  20 gttgacaccgttaataatataagaaataaagtaataaagggtaacttcatatgaaacacaaatacggacatcagacacgatacagacacattaatatcgt 119  Q
    ||||| ||||||||||||||||||||| || ||||||||||||  ||||||||||| ||  | ||||||| | ||||     |||| |||||||||||||    
T  24625375 gttgataccgttaataatataagaaatgaaataataaagggtagtttcatatgaaatacggacacggaca-cggacat----cagagacattaatatcgt 24625281  T
Q  120 tgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtctaat-taaaaaatgtccatgctcgataggtagt 218  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||| |||||||||| | ||||| |||||||||    
T  24625280 tgataatttaagaaaatcataaaatttagtgttattatatatgttgatgttgaacatgacacgtgtctaatctaaaaaatgttcgtgctcaataggtagt 24625181  T
Q  219 gtccaataggaacataggaagtactatgtgtgatagtcatagagagaa 266  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24625180 gtctaataggaacataggaagtactatgtgtgatagtcatagagagaa 24625133  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 41020506 - 41020573
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtctaa 189  Q
    ||||||||  ||||||| | |||||||||| |||||||| |||| ||||||||||||||||| |||||    
T  41020506 ataatttacaaaaatcacataatttagtgtaattatatgcgtcggtgttgaacacgacacatatctaa 41020573  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 959 - 997
Target Start/End: Complemental strand, 24624417 - 24624379
Alignment:
Q  959 ttgcttgttgtagagtgttgtgaggtgttaagatatttg 997  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  24624417 ttgcttgttgtagagtgttgtgaggtgttaaaatatttg 24624379  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 27093462 - 27093404
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgaca 180  Q
    ||||||||||||||||| | |||||||||| |||||||| |||| ||||  ||||||||    
T  27093462 ataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgaca 27093404  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 27184839 - 27184897
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgaca 180  Q
    ||||||||||||||||| | |||||||||| |||||||| |||| ||||  ||||||||    
T  27184839 ataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgaca 27184897  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 23012457 - 23012392
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 187  Q
    ||||||| ||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||||||    
T  23012457 ataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttggacacgacacatgtct 23012392  T

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Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 13134460 - 13134507
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 169  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||    
T  13134460 ataatttaagaaaatcacataatttagtgtaattatatgtgtcgatgt 13134507  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 40742601 - 40742648
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 169  Q
    ||||||| ||||||||||| ||| |||||| |||||||||||||||||    
T  40742601 ataatttgagaaaatcatataatctagtgtaattatatgtgtcgatgt 40742648  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 4781255 - 4781320
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 187  Q
    ||||||||| ||| ||||| |||||||||| ||||||||| ||||||||  | | |||||||||||    
T  4781255 ataatttaaaaaactcatataatttagtgtgattatatgtatcgatgttagatatgacacatgtct 4781320  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 21539916 - 21539879
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatat 159  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  21539916 ataatttaagaaaatcatataatttagtgtaattatat 21539879  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 31808087 - 31808150
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgt 185  Q
    ||||||||| ||||||| | |||| ||||| ||||||||||||  |||||||||||||||||||    
T  31808087 ataatttaacaaaatcacataattcagtgtaattatatgtgtcagtgttgaacacgacacatgt 31808150  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 37411293 - 37411236
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgac 179  Q
    ||||||| ||||||||| | |||| ||||| ||||||||||||||||| |||||||||    
T  37411293 ataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgac 37411236  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 30527644 - 30527601
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcg 165  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||    
T  30527644 ataatttgagaaaatcatataatttagtgtaattatatgtgtcg 30527601  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 33405433 - 33405368
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 187  Q
    ||||||| |||||| || | |||||||||| ||||||||||||| ||| | |||||||||||||||    
T  33405433 ataatttgagaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtct 33405368  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 31580176 - 31580113
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgt 185  Q
    ||||||||||||||||| | |||| ||||| |||||| |||||||||| | || ||||||||||    
T  31580176 ataatttaagaaaatcacataattgagtgtaattataggtgtcgatgtcggacgcgacacatgt 31580113  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 13364754 - 13364689
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 187  Q
    ||||||| ||||||||||| |||| ||||| || |||||||||| ||||| |||||| ||||||||    
T  13364754 ataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacacgatacatgtct 13364689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 17411920 - 17411870
Alignment:
Q  119 ttgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 169  Q
    |||||||||||||||||||||| |||| ||| | ||||||||||| |||||    
T  17411920 ttgataatttaagaaaatcatataattcagtataattatatgtgtggatgt 17411870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 9658889 - 9658954
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 187  Q
    ||||||||||||||||| | |||| ||||| ||||||| ||||| ||||  ||||||||| |||||    
T  9658889 ataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtct 9658954  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 35999371 - 35999324
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 169  Q
    ||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  35999371 ataatttaagaaaatcatataatttagtataattatatgtgttgatgt 35999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 13997896 - 13997957
Alignment:
Q  125 atttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtc 186  Q
    |||||| ||||||| | |||| ||||| ||||||||||||| ||||| | ||||||||||||    
T  13997896 atttaaaaaaatcacataattcagtgtaattatatgtgtcggtgttggagacgacacatgtc 13997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 21530694 - 21530763
Alignment:
Q  117 cgttgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtc 186  Q
    |||| ||||||| ||||||||||| ||||| || | |||||| |||||| ||| | ||||||||||||||    
T  21530694 cgttaataatttgagaaaatcatataatttggtataattataagtgtcggtgtcggacacgacacatgtc 21530763  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 1649 - 1718
Alignment:
Q  117 cgttgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtc 186  Q
    |||| ||||||| ||||||||||| ||||| || | |||||| |||||| ||| | ||||||||||||||    
T  1649 cgttaataatttgagaaaatcatataatttggtataattataagtgtcggtgtcggacacgacacatgtc 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 29508454 - 29508503
Alignment:
Q  122 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttg 171  Q
    ||||||| | ||||||||| |||| ||||| |||||||||||||||||||    
T  29508454 ataatttgaaaaaatcatataattcagtgtaattatatgtgtcgatgttg 29508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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