View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_21 (Length: 546)
Name: NF12055_low_21
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 20689621 - 20690031
Alignment:
| Q |
18 |
aagtgtttgattgcggagtttccattgataaagcaaatgggagaactaaatctgcaagggcagcttatggctgtatttcttctattcataatgctaatag |
117 |
Q |
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| T |
20689621 |
aagtgtttgattgcagagtttccattgataaggcaaatgggagaactaaatctgcaagggcagctcatggctgtatttcttctattcataatgctaatag |
20689720 |
T |
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| Q |
118 |
gttttagacttatggcttattttgctcttatgaggattggggtgacaaagaagatttctatctgactctagtataagctatagtaactatttgaatttga |
217 |
Q |
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| T |
20689721 |
gttatagacttatggcttattttgctcttatgaggattggggtgacaaagaagatttctatctgactctagtataagctatagtaactattagaatttga |
20689820 |
T |
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| Q |
218 |
aacttctctaaagtacttgaagttgtaatatgtctattaagtttgtattcaagttgtggtggatgtgtggttagtagagtgggtaaaaagtaaccatggt |
317 |
Q |
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| T |
20689821 |
atcttctctaaagtacttgaagttgtaatatgtctattaagtttgtattcaagtggt-gtggatgtgtggttagtagagtgggtaaaaagtaaccatggt |
20689919 |
T |
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| Q |
318 |
tactgctttgtgtagatttactgcagatgtttatttctgtccaacaagtactatatatatgttttctagtatgtgtttggttggggtaatgcagaaacct |
417 |
Q |
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| T |
20689920 |
tactgctttgtgtagatttactgcagatgtttatttctgtccaacaagtactatatatatgttttctagtatgtgtttggttggggtaatgcagaaacct |
20690019 |
T |
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| Q |
418 |
ttcgctctccca |
429 |
Q |
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| T |
20690020 |
ttcgctctccca |
20690031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 460 - 536
Target Start/End: Original strand, 20690061 - 20690137
Alignment:
| Q |
460 |
ttgttatcgcctccaattgttgatgcttatgtttttctaatatggtatgaaagcttcattgatatatagggtctgtg |
536 |
Q |
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| T |
20690061 |
ttgttattgcctccaattgttgatgcttatgtttttctaatatggtatgaaagcttcattgatatatagggtctgtg |
20690137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 33720944 - 33721008
Alignment:
| Q |
105 |
ataatgctaataggttttagacttatggcttattttgctcttatgaggattggggtgacaaagaa |
169 |
Q |
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| T |
33720944 |
ataatgctaattggttatagacttatagcttattgtgctcttatgaggattggagtcacaaagaa |
33721008 |
T |
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