View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_22 (Length: 536)
Name: NF12055_low_22
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 39115288 - 39115821
Alignment:
| Q |
1 |
ttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttcacatttgtataat-- |
98 |
Q |
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| T |
39115288 |
ttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttcacatttgtataattt |
39115387 |
T |
|
| Q |
99 |
------------gtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttggtgtctgtgatagcg |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115388 |
gatttgaataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttggtgtctgtgatagcg |
39115487 |
T |
|
| Q |
187 |
tttacaattgacatataggagataatgagttaggtttctgttgtattctgttacacagttagcacatttttatt----ctgttgtatacttgtaacacac |
282 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
39115488 |
tttataattgacatataggagataatgagttaggtttctgttgtattctgttacacagttagcacatttttatttattccgttgtatacttgtaacacac |
39115587 |
T |
|
| Q |
283 |
tcaaatttatctattaaatacatgagatagttgaatatccttaaggaaggagtgttattatgaaattattttgtctgttccttcctttgattaatgatgc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
39115588 |
tcaaatttatctattaaatacatgagatagttgaatatccttaaggaaggagtgttattatgaaattattttgtttgttacttcctttgattaatgatgc |
39115687 |
T |
|
| Q |
383 |
ttctttgtgttaaggttttatatccttgttagtttatgattatttggattttcatttatattatagaggaaccttatatttcattctctacattatttga |
482 |
Q |
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| T |
39115688 |
ttctttgtgttaaggttttatatccttgttagcttatgattatttggattttcatttatattatagaggaaccttatatttcattctctacattatttga |
39115787 |
T |
|
| Q |
483 |
aatttcggcaaggcgatcgaagagatgtggcggc |
516 |
Q |
| |
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| T |
39115788 |
aatttcggcaaggcgatcgaagagatgtggcggc |
39115821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 38617217 - 38616960
Alignment:
| Q |
88 |
atttgtataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttggtgtctgtgatagcg- |
186 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
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| T |
38617217 |
atttgaataatgtgaaagtagatctctatattagaccactataggctagcaatggacttccacttgagtgcaactttgtctttcgtgtctgtgatagagc |
38617118 |
T |
|
| Q |
187 |
--tttacaattgacatataggagataatgagttaggtttctgttgtattctgttacacagttagcacatt-----------------tttattctgttgt |
267 |
Q |
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| T |
38617117 |
taattacaattgacatataggcgataatgagttaggtttctcttgtattctgttacacagttagcacatttttattacagttatatatttattctgttgt |
38617018 |
T |
|
| Q |
268 |
atacttgtaacacactcaaatttatctattaaatacatgagatagttgaatatcctta |
325 |
Q |
| |
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|||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||| |
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| T |
38617017 |
atacttgtaacacactcatatttatttattcaattcatgagatagttgaatatcctta |
38616960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 325 - 496
Target Start/End: Complemental strand, 38616247 - 38616077
Alignment:
| Q |
325 |
aaggaaggagtgttattatgaaattattttgtctgttccttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgatta |
424 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38616247 |
aaggaaggagtgttattacgaaattattttgt-tgttacttcctttgatcaatgatgcttctttgtgttaaggttttatatcattgttagtttatgatta |
38616149 |
T |
|
| Q |
425 |
tttggattttcatttatattatagaggaaccttatatttcattctctacattatttgaaatttcggcaaggc |
496 |
Q |
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| T |
38616148 |
tttggattttcatttatagtctagaggaaccatatatttccttctctacattatttggattttcggcaaggc |
38616077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 17228761 - 17228695
Alignment:
| Q |
358 |
tgttccttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgatta |
424 |
Q |
| |
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|||| ||||||| ||| |||||||||||||||||||||| |||| |||||||||||| ||||||||| |
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| T |
17228761 |
tgttacttccttcgatcaatgatgcttctttgtgttaagattttgtatccttgttagattatgatta |
17228695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 19536529 - 19536466
Alignment:
| Q |
363 |
cttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgattatt |
426 |
Q |
| |
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||||||| ||| ||||||||||||||||||| || |||| |||||||||||| ||||||||||| |
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| T |
19536529 |
cttccttcgatcaatgatgcttctttgtgttgagattttgtatccttgttagattatgattatt |
19536466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 197401 - 197335
Alignment:
| Q |
358 |
tgttccttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgatta |
424 |
Q |
| |
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|||| ||||||| ||| |||||||||||||||||||||| |||| |||||| ||||| ||||||||| |
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| T |
197401 |
tgttacttccttcgatcaatgatgcttctttgtgttaagattttgtatcctggttagattatgatta |
197335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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