View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_23 (Length: 473)

Name: NF12055_low_23
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_23
NF12055_low_23
[»] chr7 (6 HSPs)
chr7 (20-449)||(21935777-21936210)
chr7 (55-435)||(9633962-9634346)
chr7 (48-410)||(7229771-7230138)
chr7 (21-313)||(4566895-4567182)
chr7 (267-424)||(28489852-28490008)
chr7 (356-432)||(11976817-11976893)
[»] chr8 (6 HSPs)
chr8 (20-413)||(8989036-8989434)
chr8 (24-449)||(28914684-28915120)
chr8 (20-452)||(22471402-22471826)
chr8 (20-202)||(22470184-22470366)
chr8 (356-404)||(24175586-24175634)
chr8 (285-313)||(17729796-17729824)
[»] chr2 (10 HSPs)
chr2 (20-436)||(18830678-18831090)
chr2 (260-449)||(27180322-27180511)
chr2 (260-449)||(27829864-27830053)
chr2 (20-416)||(27877945-27878346)
chr2 (48-155)||(18371363-18371470)
chr2 (330-450)||(18371558-18371678)
chr2 (97-308)||(25897429-25897647)
chr2 (257-313)||(14104182-14104238)
chr2 (267-406)||(27488437-27488573)
chr2 (362-457)||(21872371-21872464)
[»] chr4 (4 HSPs)
chr4 (55-435)||(13602900-13603284)
chr4 (268-436)||(12070679-12070848)
chr4 (286-406)||(3462733-3462851)
chr4 (55-313)||(14118341-14118606)
[»] chr1 (6 HSPs)
chr1 (20-453)||(18895607-18896045)
chr1 (283-382)||(14458756-14458854)
chr1 (48-100)||(27237111-27237163)
chr1 (330-417)||(22586343-22586429)
chr1 (96-259)||(30985432-30985600)
chr1 (20-94)||(22586623-22586697)
[»] chr3 (6 HSPs)
chr3 (48-458)||(14800574-14800989)
chr3 (20-204)||(8363699-8363883)
chr3 (267-382)||(8364488-8364603)
chr3 (333-448)||(26883565-26883680)
chr3 (130-313)||(27173855-27174043)
chr3 (356-406)||(21515865-21515915)
[»] chr6 (5 HSPs)
chr6 (20-406)||(22885772-22886165)
chr6 (20-402)||(22903729-22904117)
chr6 (20-406)||(22918572-22918971)
chr6 (267-409)||(23143065-23143203)
chr6 (33-136)||(23143343-23143446)
[»] scaffold0054 (1 HSPs)
scaffold0054 (20-402)||(9288-9677)
[»] chr5 (4 HSPs)
chr5 (222-406)||(24189209-24189396)
chr5 (330-417)||(17349539-17349625)
chr5 (283-382)||(30074336-30074434)
chr5 (368-449)||(20057104-20057186)
[»] scaffold0004 (2 HSPs)
scaffold0004 (267-417)||(225644-225792)
scaffold0004 (48-131)||(225416-225499)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 449
Target Start/End: Complemental strand, 21936210 - 21935777
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21936210 atagattgctagagtgctataggaatcatacattagtttcttttgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacct 21936111  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagat 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21936110 ccaaggggaattgtgggggtctttctaacttctcaagttctgggggatctaagcttcgaacatagcaaagaagaattcaaggtgatgaaattctaaagat 21936011  T
Q  220 ta----ggagcttgggtttcaaagacttagagaatttttaatttaagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgt 315  Q
    ||    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||     
T  21936010 tacgtgggagcttgggtttcaaagacttagagaatttctaatttaagaattcttgaagattgatggtgttctggttgcttagaattgaagattagggtga 21935911  T
Q  316 tcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtacc 415  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||  |||||||    
T  21935910 tcgagggaatatcatgtaatcataaaaatttgtaaacatttttcaacaatagtgtaagtccttgataaagatgttttctatcaagaagagtaaaggtacc 21935811  T
Q  416 ctgaaacgatgacgaaaggggaaccattataaat 449  Q
    ||||||| ||||||||||||||||||||||||||    
T  21935810 ctgaaacaatgacgaaaggggaaccattataaat 21935777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 55 - 435
Target Start/End: Original strand, 9633962 - 9634346
Alignment:
Q  55 gtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaattgttggggtctttctaacttctca 154  Q
    ||||||||| || ||||||||||||||||||| ||||||| |||||||| |||||||||| || ||||| |  |||||| ||||||||||||||||||||    
T  9633962 gtttctttcaagaaacttgattgaggatcaagggtctaaaggaaaagagagatttctttcaacctccaaaga-aattgtgggggtctttctaacttctca 9634060  T
Q  155 a--gttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagatta---gga-gcttgggtttcaaagacttagaga 248  Q
    |  ||||  ||||||| |||||||  | ||| ||||||||||||| |||||| | |||| ||| |||||   ||| ||||| ||||| || ||| |||||    
T  9634061 aaggttcaaggggatccaagcttcagacataacaaagaagaattcgaggtgaaggaattataaggattacatggatgcttgagtttcgaaaactaagaga 9634160  T
Q  249 atttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttg 347  Q
    ||||  ||||| |||| | ||||||||||| |||||||||||||||| | ||||||| ||| ||||  |||| || || |  ||||||| ||| ||||||    
T  9634161 atttccaattttaagagtacttgaagattggtggtgttgtggttgctcaagattgaaaatt-gggttatcgaaggaatcttttgtaatcttaacaatttg 9634259  T
Q  348 taaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaaggg 435  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  9634260 taaacatttttcaaca-tagtggaagtccttgataaagatgttttctatcaagaagagtggaggtatcctgaagcgagggcgaaaggg 9634346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 48 - 410
Target Start/End: Complemental strand, 7230138 - 7229771
Alignment:
Q  48 tacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaattgt-tggggtctttcta 146  Q
    |||||| ||||||||| |||||||||||||||| ||||   |||||| ||||||| |||| ||||||||| ||||| ||||||| |  ||||| ||||||    
T  7230138 tacattggtttctttcaaggaacttgattgaggctcaaagatctaaaggaaaagaaggatatctttccacctccaa-gggaattatggggggtgtttcta 7230040  T
Q  147 acttctcaa--gttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagatt---agga-gcttgggtttcaaaga 240  Q
    |||||||||  ||||  ||||||| ||||||| || |||| ||| ||||||||||||||| | ||||| || ||||    ||| ||||| ||||| ||||    
T  7230039 acttctcaaaggttcaaggggatccaagcttccaacatagaaaataagaattcaaggtgaaggaattcaaaggattgcatggaggcttgagtttcgaaga 7229940  T
Q  241 cttagagaatttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcata 339  Q
    | |||||  |||| ||||| ||||   ||||||||||| | |||| ||||||||||||||| ||| ||||||||  |||| || || |  ||||||||||    
T  7229939 cctagaggcttttcaatttcaagagaacttgaagattgctagtgtcgtggttgcttaggatagaaaattagggt-atcgaaggaatcttttgtaatcata 7229841  T
Q  340 aaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggag 410  Q
    | ||||||||||||||||||||| ||| |||||||||||||||  ||  | ||||||||||||||| ||||    
T  7229840 acaatttgtaaacatttttcaac-atagtggaagtccttgatagagagatattctatcaagaagaggggag 7229771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 4566895 - 4567182
Alignment:
Q  21 tagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatc 120  Q
    ||||||| |||||||||||||||||  |||||| ||||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||    
T  4566895 tagattgctagagtgctataagaattgtacattggtttcttttaaggaacttgattgaggatcaagggtctaaaggaaaagagggatttcttttcacctc 4566994  T
Q  121 caaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagat- 219  Q
    | ||| ||||||| ||||||||||           ||| | | ||||| |||||||    |||||||||||||||| ||||||| | ||||  || |||     
T  4566995 ctaggtgaattgtgggggtctttc-----------gttgtagaggatccaagcttccggcatagcaaagaagaatttaaggtgaaggaattacaaggatt 4567083  T
Q  220 ---taggagcttgggtttcaaagacttagagaatttttaattt--aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
       | |||||||| ||||| ||||||| |||||| |  |||||  | || | ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  4567084 gcatgggagcttgagtttcgaagacttggagaatctccaatttcaaggactacttgaagattggtggtgttgtggttgcttagggttgaagattagggt 4567182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 28489852 - 28490008
Alignment:
Q  267 cttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaata 366  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||| ||    | ||||||||| |||||||||||| || |||||||||    
T  28489852 cttgatgattgatggtgttgtggttgcttaggatagaagattagggttatcgagggaattctttctaatcataacaatttgtaaacaattctcaacaata 28489951  T
Q  367 atggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacga 424  Q
    || |||||||||||||  ||||| ||||||||||||  || || ||||| ||||||||    
T  28489952 at-gaagtccttgatagagatgtattctatcaagaaatgtagacgtaccttgaaacga 28490008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 11976817 - 11976893
Alignment:
Q  356 tttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaa 432  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||| || |||||  ||| ||| |||||||    
T  11976817 tttcaacaatagtggaagttcttgataaagatgttttctatcaagaagagtagacgtacctcgaagcgaggacgaaa 11976893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 8989036 - 8989434
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    |||||||| ||||||||||||||| |  |||||| ||||||||| |||||||||||||||||||| | ||||||| ||||||||| |||| ||||||| |    
T  8989036 atagattgctagagtgctataagagttgtacattggtttctttcaaggaacttgattgaggatcatgggtctaaaggaaaagaggaatttgtttccacct 8989135  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagat 219  Q
    | |||||||||||| ||||  ||||||||||||||||||   |  |||| |||||| | | ||||||| |||||||||||||| | | ||||| ||  ||    
T  8989136 ctaaggggaattgtggggggttttctaacttctcaagtttaagccgatccaagctttggacatagcaacgaagaattcaaggtcaaggaattccaataat 8989235  T
Q  220 ta----ggagcttgggtttcaaagacttagagaatttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtg 314  Q
    |     |||||||| ||||| ||||||||||||||||  ||||| |||| ||||||||||||| | ||||||||||||||| |||||||||||||||||     
T  8989236 tgcatgggagcttgagtttcgaagacttagagaatttccaatttcaagagttcttgaagattggttgtgttgtggttgcttgggattgaagattagggtt 8989335  T
Q  315 ttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggta 413  Q
    ||||| || ||||  ||||||||||| |||||||||| ||||||||| |||| |||||||||||||||  || ||||||||||||||||||||||||||    
T  8989336 ttcgatggaatattttgtaatcataacaatttgtaaatatttttcaataatagtggaagtccttgatagagaagttttctatcaagaagagtggaggta 8989434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 24 - 449
Target Start/End: Complemental strand, 28915120 - 28914684
Alignment:
Q  24 attgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaa 123  Q
    |||| |||||||||| ||||||  |||||| |||||||||  ||||||||||||||||||||| |||||  | |||||| ||||||||||||||  ||||    
T  28915120 attgctagagtgctacaagaattgtacattggtttctttcagggaacttgattgaggatcaagggtctacgaaaaaagacggatttctttccaccaccaa 28915021  T
Q  124 ggggaattgttgggg--tctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagatta 221  Q
     ||||||||| ||||  |||||||||||||| | |||   || |||| ||||||| ||  ||| ||||||||||||||||||| | ||||| ||  | ||    
T  28915020 cgggaattgtggggggttctttctaacttcttacgtttaaggagatccaagcttcaaacttagaaaagaagaattcaaggtgaaggaattccaactaata 28914921  T
Q  222 g-------gagcttgggtttcaaagacttagagaatttttaatttaa-gaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
            ||||||  ||||| |||||||| ||||| ||  |||||| || || |||||||||| |||||||  ||||||||||||||||||||||||||    
T  28914920 tttcatgagagcttaagtttcgaagacttaaagaatcttctatttaaagagtttttgaagattggtggtgtttaggttgcttaggattgaagattagggt 28914821  T
Q  314 gttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggta 413  Q
      || ||   || |  ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||||  |||||||||    
T  28914820 tatcaagaaaatcttttgtaatcataacaatttgtaaacatttttcaacaatagtggaagtccttgataaaggcgttttctatcaagaatggtggaggta 28914721  T
Q  414 ccctgaaacgatgacg-aaaggggaaccattataaat 449  Q
    ||| ||| | | |||| ||||||||||||||||||||    
T  28914720 ccccgaagcaaggacgaaaaggggaaccattataaat 28914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 452
Target Start/End: Complemental strand, 22471826 - 22471402
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    |||||||| |||||| |||||||| |  |||| | ||||||||| ||||| |||||||||||||||  |||||||  |||||||| |||||||||||| |    
T  22471826 atagattgctagagtactataagatttgtacaatggtttctttcaaggaatttgattgaggatcaaaggtctaaataaaaagaggaatttctttccacct 22471727  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaatt-caaggtgatgaaattctaaaga 218  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||| ||||||| || |||| ||| ||||||| |||||       |||     |     
T  22471726 ccaaggggaattgtgggggtctttctaacttctcaagttcaaggggatccaagcttcaaacatagaaaataagaattccaagg-------att-----gc 22471639  T
Q  219 ttaggagcttgggtttcaaagacttagagaatttttaattt-aaga-attcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgtt 316  Q
     | |||||||| ||||||||||||||||||||||  ||||| |||| ||  |||||||||| |||| ||||||||||||| || |||||||||||||  |    
T  22471638 atgggagcttgagtttcaaagacttagagaatttccaatttcaagagatagttgaagattggtggtattgtggttgcttatgactgaagattagggttat 22471539  T
Q  317 cgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccc 416  Q
    |||||| || |  ||||||||||| ||||||| || |||||||||||||| | |||||| || |||  || ||||||||| || ||||||||||||||||    
T  22471538 cgagggaatcttttgtaatcataacaatttgtgaatatttttcaacaatagtagaagtctttaatagagacgttttctataaaaaagagtggaggtaccc 22471439  T
Q  417 tgaaacgatgacgaaa-ggggaaccattataaatcct 452  Q
      |||| | |||||||  |||||||| | ||||||||    
T  22471438 caaaacaaggacgaaatagggaaccactgtaaatcct 22471402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 22470366 - 22470184
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    ||||||||  |||||| |||| ||||  || ||| ||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||| |    
T  22470366 atagattgcaagagtgatatatgaattgtagattggtttctttcaaggaatttgattgaggatcaaggttctaaaagaaaagagggatttctttccacct 22470267  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggt 202  Q
    |||| || |||| |  ||||||||||||||||||||||||  ||||||| |||||||| | ||||||||||||||||||||||    
T  22470266 ccaatggaaattttgagggtctttctaacttctcaagttcaaggggatccaagcttcggacatagcaaagaagaattcaaggt 22470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 24175634 - 24175586
Alignment:
Q  356 tttcaacaataatggaagtccttgataaggatgttttctatcaagaaga 404  Q
    ||||||||||| |||||||| ||||||  ||||||||||||||||||||    
T  24175634 tttcaacaatagtggaagtctttgatagagatgttttctatcaagaaga 24175586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 17729824 - 17729796
Alignment:
Q  285 tgtggttgcttaggattgaagattagggt 313  Q
    |||||||||||||||||||||||||||||    
T  17729824 tgtggttgcttaggattgaagattagggt 17729796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 18831090 - 18830678
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    |||||||| |||||||||||| ||||  |||||| ||||||||| |||||||||||||||||||||| ||||||| ||||| |||||          | |    
T  18831090 atagattgctagagtgctataggaattgtacattggtttctttcaaggaacttgattgaggatcaagggtctaaaggaaaacaggga----------cct 18831001  T
Q  120 ccaaggggaattgttgggg--tctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaag 217  Q
    ||||||| |||| | ||||  |||||||||||| |||||||   ||||||| |||||||  | |||||||||||||||| ||||||| | ||||| ||||    
T  18831000 ccaagggaaattatgggggggtctttctaacttttcaagttgaaggggatccaagcttcagacatagcaaagaagaatttaaggtgaaggaattccaaag 18830901  T
Q  218 atta---ggagcttgggtttcaaagacttagagaatttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
    |||    ||||||||  ||||||| |||||||||||||  ||||| |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18830900 attgtagggagcttgaatttcaaaaacttagagaatttccaatttcaagagttcttgaagattggtggtgttgtagttgcttaggattgaagattagggt 18830801  T
Q  314 gttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggta 413  Q
      |||| || || |  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||| | | | ||||||||||||||||||||||||    
T  18830800 tatcgaaggaatcttctataatcataacagtttgtaaacatttttcaagaatagtggaagtccttgataggaacgatttctatcaagaagagtggaggta 18830701  T
Q  414 ccctgaaacgatgacgaaagggg 436  Q
    |||  |||||| ||| |||||||    
T  18830700 ccccaaaacgaggacaaaagggg 18830678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 449
Target Start/End: Original strand, 27180322 - 27180511
Alignment:
Q  260 aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttc 359  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||  | ||||| ||||  ||||||||||| |||||||||| |||||||    
T  27180322 aagagttcttgaagattggtggtgttatggttgcttaggattgaagattagggttattgagggaatatgttgtaatcataacaatttgtaaatatttttc 27180421  T
Q  360 aacaataatggaagtccttgata-aggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaa-ggggaaccattataaat 449  Q
    ||||||| ||||||||||||||| |||| ||||||||||  ||||||||||||||||| |||| || ||||||| ||||||||| |||||||    
T  27180422 aacaatagtggaagtccttgatagagga-gttttctatcgtgaagagtggaggtaccc-gaaatgaggacgaaatggggaaccactataaat 27180511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 449
Target Start/End: Original strand, 27829864 - 27830053
Alignment:
Q  260 aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttc 359  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||  | ||||| ||||  ||||||||||| |||||||||| |||||||    
T  27829864 aagagttcttgaagattggtggtgttatggttgcttaggattgaagattagggttattgagggaatatgttgtaatcataacaatttgtaaatatttttc 27829963  T
Q  360 aacaataatggaagtccttgata-aggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaa-ggggaaccattataaat 449  Q
    ||||||| ||||||||||||||| |||| ||||||||||  ||||||||||||||||| |||| || ||||||| ||||||||| |||||||    
T  27829964 aacaatagtggaagtccttgatagagga-gttttctatcgtgaagagtggaggtaccc-gaaatgaggacgaaatggggaaccactataaat 27830053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 27877945 - 27878346
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    ||||||||||  ||||||||| | ||  |||||| ||||||||  ||||||||||||||||||||||  |||||| ||||||||| |||| ||||||| |    
T  27877945 atagattgttttagtgctatatggattgtacattggtttctttgaaggaacttgattgaggatcaaggttctaaaggaaaagaggaatttgtttccacct 27878044  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagat 219  Q
    |||||| ||||||| ||||| |||||||||| ||||| ||  ||||||||||||||   | |||||||||||||||| ||||||| | ||||| || |||    
T  27878045 ccaaggtgaattgtgggggt-tttctaacttatcaagctcaaggggatctaagctttagacatagcaaagaagaatttaaggtgaaggaattccaaggat 27878143  T
Q  220 ----taggagcttgggtttcaaagacttagagaatttttaattt-aagaatt-cttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
        |  ||||||| ||||| |||||||  || || || ||||| |||  || | ||||||||| | ||||||| ||||| |||||||||| || |||||    
T  27878144 tgcatgagagcttgagtttcgaagacttgaagcatcttcaatttcaagggttacatgaagattggtagtgttgtagttgcgtaggattgaaaatcagggt 27878243  T
Q  314 gttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggta 413  Q
      ||||||| ||    ||||||||||| ||||| |||||| ||||| |||||| ||||||||| | |||  ||| |||| |||| |||||| ||||||||    
T  27878244 tatcgagggaattctttgtaatcataacaatttataaacaattttcgacaatagtggaagtccctaatatagattttttttatcgagaagaatggaggta 27878343  T
Q  414 ccc 416  Q
    |||    
T  27878344 ccc 27878346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 18371363 - 18371470
Alignment:
Q  48 tacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaattgttggggtctttctaa 147  Q
    |||||| ||||||||| |||||||||||||||||||||| ||| ||| ||||| || | ||||||||||| |||||||||||||||  | ||||||||||    
T  18371363 tacattggtttctttcaaggaacttgattgaggatcaagggtccaaaggaaaatagagctttctttccacctccaaggggaattgtgagtgtctttctaa 18371462  T
Q  148 cttctcaa 155  Q
    ||||||||    
T  18371463 cttctcaa 18371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 18371558 - 18371678
Alignment:
Q  330 tgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacg 429  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||||||  ||  ||||||| |||||||| ||||||||||| ||| ||| ||||    
T  18371558 tgtaatcataacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacattttctaacaagaagaatggaggtaccccgaagcgaggacg 18371656  T
Q  430 aaa-ggggaaccattataaatc 450  Q
    ||| ||||||||| ||||||||    
T  18371657 aaagggggaaccactataaatc 18371678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 97 - 308
Target Start/End: Original strand, 25897429 - 25897647
Alignment:
Q  97 aaaagagggatttctttccacatccaaggggaattgttggggtctttctaa-cttctcaagttctgggggatctaagcttcgaatatagcaaagaagaat 195  Q
    ||||||| ||||| ||||||| ||||||| ||||||| ||||||||||||| ||||||||||||   |||||| ||||| || | || |||||||||| |    
T  25897429 aaaagagtgatttatttccacttccaaggtgaattgtgggggtctttctaatcttctcaagttcaaagggatccaagctccggacattgcaaagaagagt 25897528  T
Q  196 tcaaggtgatgaaattctaaagatt----aggagcttgggtttcaaagacttagagaatttttaattt-aagaatt-cttgaagattgatggtgttgtgg 289  Q
    |||||||||   |||||||||||||      ||| ||  ||||| |||||| ||||||| | |||||| |||  || |||||||||||| ||||||||||    
T  25897529 tcaaggtgaaagaattctaaagattgcacgagagtttaagtttcgaagactgagagaatctataatttcaagggttacttgaagattgacggtgttgtgg 25897628  T
Q  290 ttgcttaggattgaagatt 308  Q
    |||||||  ||||||||||    
T  25897629 ttgcttataattgaagatt 25897647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 14104238 - 14104182
Alignment:
Q  257 tttaagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  14104238 tttaagaattcttgaagattggaggtgttgtggttgcttaggattgaagattagggt 14104182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 406
Target Start/End: Original strand, 27488437 - 27488573
Alignment:
Q  267 cttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaata 366  Q
    ||||||||||||  | |||||||||| || ||||||||||||||| |  ||||| | ||    |||||||||||||||| |||| ||  |||||||||||    
T  27488437 cttgaagattga--gagttgtggttgattgggattgaagattaggattatcgagagaattctttgtaatcataaaaatt-gtaatcaaatttcaacaata 27488533  T
Q  367 atggaagtccttgataaggatgttttctatcaagaagagt 406  Q
     |||||||||||||||  || || |||||||| |||||||    
T  27488534 gtggaagtccttgatagagacgtattctatcaggaagagt 27488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 21872371 - 21872464
Alignment:
Q  362 caataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaa-ggggaaccattataaatcctgatgt 457  Q
    ||||| |||||||||||||||  ||  |||||||||   ||||||||| |||||| ||| ||| ||||||| ||||||||| ||||||||| |||||    
T  21872371 caatagtggaagtccttgatagagacattttctatc---aagagtggacgtaccccgaagcgaggacgaaagggggaaccactataaatcccgatgt 21872464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 55 - 435
Target Start/End: Complemental strand, 13603284 - 13602900
Alignment:
Q  55 gtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaattgttggggtctttctaacttctca 154  Q
    ||||||||| || ||||||||||||||||||| ||||||| |||||||| |||||||||| || ||||| |  |||||| ||||||||||||||||||||    
T  13603284 gtttctttcaagaaacttgattgaggatcaagggtctaaaggaaaagagagatttctttcaacctccaaaga-aattgtgggggtctttctaacttctca 13603186  T
Q  155 a--gttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagatta---gga-gcttgggtttcaaagacttagaga 248  Q
    |  ||||  ||||||| |||||||  | ||| ||||||||||||| |||||| | |||| ||| |||||   ||| ||||| ||||| || ||| |||||    
T  13603185 aaggttcaaggggatccaagcttcagacataacaaagaagaattcgaggtgaaggaattataaggattacatggatgcttgagtttcgaaaactaagaga 13603086  T
Q  249 atttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttg 347  Q
    ||||  ||||| |||| | ||||||||||| |||||||||||||||| | ||||||| ||| ||||  |||| || || |  ||||||| ||| ||||||    
T  13603085 atttccaattttaagagtacttgaagattggtggtgttgtggttgctcaagattgaaaatt-gggttatcgaaggaatcttttgtaatcttaacaatttg 13602987  T
Q  348 taaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaaggg 435  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  13602986 taaacatttttcaaca-tagtggaagtccttgataaagatgttttctatcaagaagagtggaggtatcctgaagcgagggcgaaaggg 13602900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 436
Target Start/End: Original strand, 12070679 - 12070848
Alignment:
Q  268 ttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataa 367  Q
    |||||||||| |||||||||||||||||| |||| | |||||||||  || || | || |  ||||||||||| |||||||  ||||||||||||||||     
T  12070679 ttgaagattggtggtgttgtggttgcttaagattaaggattagggttatcaagcgaatcttttgtaatcataataatttgttcacatttttcaacaatag 12070778  T
Q  368 tggaagtccttgataaggatgttttctatcaagaagagt-ggaggtaccctgaaacgatgacgaaagggg 436  Q
     |||| ||||||||||  | ||||||||||||||||| | |||||||||  ||| ||| |||||||||||    
T  12070779 cggaaatccttgataaaaacgttttctatcaagaagactgggaggtacctcgaagcgaggacgaaagggg 12070848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 406
Target Start/End: Complemental strand, 3462851 - 3462733
Alignment:
Q  286 gtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataagg 385  Q
    |||||||||||||||||||||||||||  || || || || |  || ||  |||| |||||||||||||||||||||| || |||||||||||||||  |    
T  3462851 gtggttgcttaggattgaagattagggaatt-gaaggaatcttttgcaactataacaatttgtaaacatttttcaaca-tagtggaagtccttgatagag 3462754  T
Q  386 atgttttctatcaagaagagt 406  Q
    |  ||||||||||||||||||    
T  3462753 acattttctatcaagaagagt 3462733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 313
Target Start/End: Complemental strand, 14118606 - 14118341
Alignment:
Q  55 gtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaa-gagggatttctttccacatccaaggggaattgttggggtctttctaa-cttct 152  Q
    ||||||||| ||||||||||||  | |||||| ||| ||| ||||| |||  |||||||||||| ||||||| || ||  ||| |||||||||| |||||    
T  14118606 gtttctttcaaggaacttgatttggaatcaagggtccaaaggaaaaagagaaatttctttccacctccaaggtgattttgtggagtctttctaatcttct 14118507  T
Q  153 caagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagatta----ggagcttgggtttcaaagacttagaga 248  Q
    || ||||  ||||||| || ||||| | |||| ||| |||| ||| |||||| ||| ||| ||||||||    |||  ||| ||||  || ||||||| |    
T  14118506 cacgttcaaggggatccaatcttcggacatagaaaataagagttcgaggtgaagaacttc-aaagattacatgggactttgagttttgaaaacttagata 14118408  T
Q  249 atttttaattt-aagaatt-cttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
    || |  ||||| |||  || ||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  14118407 atctccaatttcaagggttacttgaagattggtggtgttctggttgcttaagattgaagattagggt 14118341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 18896045 - 18895607
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    |||||||| |||||||||||| || |  | |||| ||||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||||||||||| |    
T  18896045 atagattgctagagtgctataggagttgtgcattggtttctttcaaggaacttgattgaggatcaagggtctaaatgaaaaaaggtatttctttccacct 18895946  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaa--gttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaag 217  Q
    |||||||||| || ||||||||||||||||||||||   ||   ||||||| |||||||  | ||| ||||||||||||||| |||| | ||||| || |    
T  18895945 ccaaggggaagtg-tggggtctttctaacttctcaaagatttaaggggatccaagcttccgacatatcaaagaagaattcaatgtgaaggaattccaagg 18895847  T
Q  218 at----taggagcttgggtttcaaagacttagagaatttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattaggg 312  Q
    ||    | | | |||| |||||||||||||  || ||||  ||||| |||| | ||||||||||| ||||||||||||||||||||||||||||||| |     
T  18895846 attgcgtggaaacttgagtttcaaagacttgaaggatttcaaatttcaagagtacttgaagattggtggtgttgtggttgcttaggattgaagatta-gc 18895748  T
Q  313 tgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggt 412  Q
    |  ||||  | ||||  ||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||  ||||||| ||| ||| |||||||| |||    
T  18895747 ttatcgaatgaatattttgtaatcataaaaatttgtaagcatttttcaac-atagtggaggtccttgatatagatgtttactaacaataagagtggcggt 18895649  T
Q  413 accctgaaacgatgacg-aaaggggaaccattataaatcctg 453  Q
    | |  ||| ||| || | |||||||||||| |||||||||||    
T  18895648 atctcgaagcgaggatgaaaaggggaaccactataaatcctg 18895607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 382
Target Start/End: Complemental strand, 14458854 - 14458756
Alignment:
Q  283 gttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgata 382  Q
    |||||||||||||||||||||||||||||||  ||||||| ||   |||||||||||| || |||||| ||  ||||||||||| ||||| |||||||||    
T  14458854 gttgtggttgcttaggattgaagattagggttatcgagggaattctatgtaatcataacaa-ttgtaatcaaatttcaacaatagtggaaatccttgata 14458756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 27237111 - 27237163
Alignment:
Q  48 tacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaa 100  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||||| |||||    
T  27237111 tacattggtttctttcaaggaacttgattgaggatcaagggtctaaacgaaaa 27237163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 22586429 - 22586343
Alignment:
Q  330 tgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccct 417  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||  ||| ||  ||  ||||||||||||||||||||| |||||||    
T  22586429 tgtaatcataataatttgtaaacattttccaac-atagtggaagtatttgctagagactttttctatcaagaagagtggatgtaccct 22586343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 30985600 - 30985432
Alignment:
Q  96 gaaaagagggatttctttccacatccaaggggaattgttggggtctttctaa-cttctcaagttctgggggatctaagcttcgaatatagcaaagaagaa 194  Q
    ||||||||| |||||||||||| ||||||| ||||||    ||||||||||| |||||| |||||   |||||| || ||||||| || | |||||||||    
T  30985600 gaaaagaggaatttctttccacctccaaggtgaattgggaaggtctttctaatcttctcgagttcaatgggatccaaacttcgaacattgaaaagaagaa 30985501  T
Q  195 ttcaaggtgatgaaattctaaagat----taggagcttgggtttcaaagacttagagaatttttaattt 259  Q
    ||||| ||||   ||||| || |||    |||||||||| ||||  |||||||||||||| || |||||    
T  30985500 ttcaatgtgaaagaattccaatgattgcataggagcttgagtttagaagacttagagaatcttcaattt 30985432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 22586697 - 22586623
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaa 94  Q
    |||||||| ||  ||||||||||| |  |||||  ||||||||| |||||||||||||||||||||| |||||||    
T  22586697 atagattggtacggtgctataagagttgtacatcggtttctttcaaggaacttgattgaggatcaagggtctaaa 22586623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 48 - 458
Target Start/End: Original strand, 14800574 - 14800989
Alignment:
Q  48 tacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaattgttggggtctttctaa 147  Q
    |||||| ||||||||| |||||||||||||||| | ||  |||||||| ||||||||||||| ||||||| | ||| | ||||||| |||||||||||||    
T  14800574 tacattggtttctttcaaggaacttgattgagggttaaaagtctaaaataaaagagggatttgtttccaccttcaaagtgaattgtgggggtctttctaa 14800673  T
Q  148 cttctc--aagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaagat----taggagcttgggtttcaaagac 241  Q
    ||||||  |||||   ||||||| |||||||| | |||||||||||||||||||||||| |  |||| ||  ||    | | |||||| ||||  |||||    
T  14800674 cttctcagaagttaaaggggatccaagcttcggacatagcaaagaagaattcaaggtgaagggattccaagtattgcatggaagcttgagttttgaagac 14800773  T
Q  242 ttagagaatttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataa 340  Q
    ||   ||||||  ||||| |||| | ||||||||||| ||||||||| |||  |||||||||||||||| |||  || | || || |  ||||| |||||    
T  14800774 ttgtggaatttccaatttcaagagtacttgaagattggtggtgttgttgtttattaggattgaagatta-ggttatcaaaggaatcttttgtaaccataa 14800872  T
Q  341 aaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaaggggaacc 440  Q
     |||||||||| |||||||||| ||| ||||||| |||||||  || |||||| |||||||||||||||||||||  ||| ||| |||||||||||| ||    
T  14800873 caatttgtaaatatttttcaac-atagtggaagttcttgatagagacgttttcaatcaagaagagtggaggtacctcgaagcgaggacgaaaggggagcc 14800971  T
Q  441 attataaatcctgatgtc 458  Q
    | ||| |||||| |||||    
T  14800972 actattaatcctaatgtc 14800989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 8363699 - 8363883
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacat 119  Q
    |||||||| |||||| ||||| | ||  || ||| ||||||||| ||||||||| |||||||  ||| ||| ||| |||||||||||||||||||||| |    
T  8363699 atagattgctagagtactatatgtattgtatattggtttctttcaaggaacttggttgaggacgaagggtccaaacgaaaagagggatttctttccacct 8363798  T
Q  120 ccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtga 204  Q
    |||| | || |||| |||||||||||||||| ||||||||  ||||||| |||||| | |||||||||||||| |||||||||||    
T  8363799 ccaaagtgacttgtgggggtctttctaacttttcaagttcaaggggatccaagctttggatatagcaaagaaggattcaaggtga 8363883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 382
Target Start/End: Original strand, 8364488 - 8364603
Alignment:
Q  267 cttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaata 366  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| |  |||| || ||    || ||||||||||||||||||||| ||||||||||||    
T  8364488 cttgaagattggtggtgttgtggttgtttaggattgaagattaggattatcgatggaattctttgcaatcataaaaatttgtaaacaattttcaacaata 8364587  T
Q  367 atggaagtccttgata 382  Q
     |||||||||||||||    
T  8364588 gtggaagtccttgata 8364603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 448
Target Start/End: Original strand, 26883565 - 26883680
Alignment:
Q  333 aatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaa 432  Q
    |||||||| ||| |||||||| || ||||||||| |||||||||| ||||   | ||||||||||||||||||| || |||||| ||| ||| |||||||    
T  26883565 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtaccccgaagcgaggacgaaa 26883664  T
Q  433 ggggaaccattataaa 448  Q
    ||| ||| | ||||||    
T  26883665 gggaaactactataaa 26883680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 313
Target Start/End: Original strand, 27173855 - 27174043
Alignment:
Q  130 ttgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaaga----ttaggag 225  Q
    |||| ||| |||||||||||||||||||||  ||||||| |||||||||| | | ||||||| || |||||||||  | |||  || ||     | | ||    
T  27173855 ttgtggggatctttctaacttctcaagttcaaggggatccaagcttcgaacacaacaaagaaaaactcaaggtgagcagatttcaaggactgcatggaag 27173954  T
Q  226 cttgggtttcaaagacttagagaatttttaattt-aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattagggt 313  Q
    |||| |||||||||||||| | |||||  ||||| |||| | ||||||||||| ||||| ||||||| |||| |||||||||| |||||    
T  27173955 cttgagtttcaaagacttataaaatttccaatttcaagagtacttgaagattggtggtggtgtggtttcttatgattgaagatcagggt 27174043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 21515915 - 21515865
Alignment:
Q  356 tttcaacaataatggaagtccttgataaggatgttttctatcaagaagagt 406  Q
    ||||||||||| |||||||||||||||  ||||| || |||||||||||||    
T  21515915 tttcaacaatagtggaagtccttgatagagatgtattatatcaagaagagt 21515865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 22885772 - 22886165
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgagg-aacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccaca 118  Q
    |||||||| ||||||| |||| ||||  |||| |||||| ||| || | |||||||||||||||||||  |||||| || |||||||||||||||||||     
T  22885772 atagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggatctaaaggacaagagggatttctttccacc 22885871  T
Q  119 tccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaaga 218  Q
    || |||||||||||| |||||||||||||||| |||||||   ||||||| || |||  || |||| ||| ||||||| ||||||| | |||||  | ||    
T  22885872 tcgaaggggaattgtgggggtctttctaacttttcaagtttaaggggatccaaactttaaacatagaaaataagaatttaaggtgaaggaattcccagga 22885971  T
Q  219 t----taggagcttgggtttcaaagacttagagaatttttaattt--aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattaggg 312  Q
    |    | ||| |||| ||||| || ||||||| ||| |  |||||  | |  | ||||||||| | |||||||||| |||||||||||||||||||||||    
T  22885972 tttcatgggaacttgagtttcgaaaacttagaaaatctccaatttcaacgggtacttgaagatcggtggtgttgtgattgcttaggattgaagattaggg 22886071  T
Q  313 tgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagt 406  Q
    |  ||||||| ||    ||||||||||| ||||| |||||| |||||||||||| |  |||| | |||||| || |||||||||||||||||||    
T  22886072 ttatcgagggaattatttgtaatcataacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaagagt 22886165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 22903729 - 22904117
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgagg-aacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccaca 118  Q
    |||||||| ||||||| |||| ||||  |||| |||||| ||| || | |||||||||||||||||||  |||||| || |||||||||||||||||||     
T  22903729 atagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggatctaaaggacaagagggatttctttccacc 22903828  T
Q  119 tccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaaga 218  Q
    || ||||| ||||| ||||| ||||||||||| |||||||   ||||||| ||  ||| || |||| ||| ||||||||||||||| | |||||  | ||    
T  22903829 tcgaagggaaattg-tgggggctttctaacttttcaagtttaaggggatccaaatttcaaacatagaaaataagaattcaaggtgaaggaattcccagga 22903927  T
Q  219 t----taggagcttgggtttcaaagacttagagaatttttaattt--aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattaggg 312  Q
    |    | ||| |||| ||||| || ||||||  ||| |  |||||  | |  | ||||||||| | |||||||||| || ||||||||||||||||||||    
T  22903928 tttcatgggaacttgagtttcgaaaacttaggaaatctccaatttcaacgggtacttgaagatcggtggtgttgtgatttcttaggattgaagattaggg 22904027  T
Q  313 tgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaa 402  Q
    |  ||||||| ||    ||||||| ||| ||||| |||||| |||||||||||| |  |||| | |||||| || |||||||||||||||    
T  22904028 ttatcgagggaattatttgtaatcctaacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaa 22904117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 22918572 - 22918971
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtc-------taaaagaaaagagggatttctt 112  Q
    |||||||| ||||||| |||| ||||  |||| |||||| |||| || | |||||||||||||||||  ||       |||| || ||||||||||||||    
T  22918572 atagattgctagagtgttataggaattgtacactagtttatttcaagtaccttgattgaggatcaaggatcaaggacataaaggacaagagggatttctt 22918671  T
Q  113 tccacatccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattc 212  Q
    ||||| || |||||||||| | || ||||||||||||| |||||||   ||||||| || |||| || |||| ||| |||||||||| |||| | |||||    
T  22918672 tccacctcgaaggggaattatgggagtctttctaacttttcaagtttaaggggatccaaacttcaaacatagaaaataagaattcaaagtgaaggaattc 22918771  T
Q  213 taaagat----taggagcttgggtttcaaagacttagagaatttttaattt--aagaattcttgaagattgatggtgttgtggttgcttaggattgaaga 306  Q
      | |||    | ||| |||  ||||| || ||| ||||||| |  |||||  |||  | ||||||||| | |||||||||| |||||||||||||||||    
T  22918772 ctaggatttcatgggaactttagtttcgaaaactcagagaatctccaatttcaaaggttacttgaagatcggtggtgttgtgattgcttaggattgaaga 22918871  T
Q  307 ttagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagt 406  Q
    ||||| |  ||||||| ||     |||||| ||| ||||||||| || |||| ||||||| |  |||| | ||||||  | ||||||||| |||||||||    
T  22918872 ttaggtttatcgagggaattattcgtaatcgtaacaatttgtaaccaatttttaacaatagtaaaagttcatgataacaacgttttctatgaagaagagt 22918971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 409
Target Start/End: Complemental strand, 23143203 - 23143065
Alignment:
Q  267 cttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaata 366  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||  |   | |  || |  ||||||||||| ||||||||||||||||||||| |||    
T  23143203 cttgaagattggtggtagtgtggttgcttaggattgaagattagggaataaaaaga-atcttttgtaatcataacaatttgtaaacatttttcaac-ata 23143106  T
Q  367 atggaagtccttgataaggatgttttctatcaagaagagtgga 409  Q
     || |||||||||||| |  |||||||||||||||||||||||    
T  23143105 gtgtaagtccttgatatg--tgttttctatcaagaagagtgga 23143065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 23143446 - 23143343
Alignment:
Q  33 gtgctataagaatcatacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaattg 132  Q
    |||||||| ||||  |||||| ||||||||| |||||||||||||||||| |||  || ||| ||||||| | || | ||| ||| ||||||||||||||    
T  23143446 gtgctataggaattgtacattggtttctttcaaggaacttgattgaggataaaggctccaaaggaaaagaagaatcttttttcacctccaaggggaattg 23143347  T
Q  133 ttgg 136  Q
    ||||    
T  23143346 ttgg 23143343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 9288 - 9677
Alignment:
Q  20 atagattgttagagtgctataagaatcatacattagtttctttcgagg-aacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccaca 118  Q
    |||||||| ||||||| |||| ||||  |||| |||||| ||| || | |||||||||||||||||||  |||||| || |||||||||||||||||||     
T  9288 atagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggatctaaaggacaagagggatttctttccacc 9387  T
Q  119 tccaaggggaattgttggggtctttctaacttctcaagttctgggggatctaagcttcgaatatagcaaagaagaattcaaggtgatgaaattctaaaga 218  Q
    || |||||||||||| |||||||||||||||| |||||||   ||||||| || |||  || |||| ||| ||||||| ||||||| | |||||  | ||    
T  9388 tcgaaggggaattgtgggggtctttctaacttttcaagtttaaggggatccaaactttaaacatagaaaataagaatttaaggtgaaggaattcccagga 9487  T
Q  219 t----taggagcttgggtttcaaagacttagagaatttttaattt--aagaattcttgaagattgatggtgttgtggttgcttaggattgaagattaggg 312  Q
    |    | ||| |||| ||||| || ||||||  ||| |  |||||  | |  | ||||||||| | |||||||||| || ||||||||||||||||||||    
T  9488 tttcatgggaacttgagtttcgaaaacttagtaaatctccaatttcaacgggtacttgaagatcggtggtgttgtgatttcttaggattgaagattaggg 9587  T
Q  313 tgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaa 402  Q
    |  ||||||| ||    ||||||| ||| ||||| |||||| |||||||||||| |  |||| | |||||| || |||||||||||||||    
T  9588 ttatcgagggaattatttgtaatcttaacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaa 9677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 406
Target Start/End: Original strand, 24189209 - 24189396
Alignment:
Q  222 ggagcttgggtttcaaagacttagagaatttttaattt-aagaatt-cttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcga 319  Q
    |||||||||||||  |||||||||||||| |  ||||| |||  || ||||||||||| |||||||||||||||||||||| || | |||||||  ||||    
T  24189209 ggagcttgggttttgaagacttagagaatctccaatttcaagggttacttgaagattggtggtgttgtggttgcttaggatggagggttagggttatcga 24189308  T
Q  320 ggggatatcat-gtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagt 406  Q
    | | || |  | |||||||||||||||||||||||||| | || || | |||||||| ||||||| || || || |||||||||||||    
T  24189309 gagaatttttttgtaatcataaaaatttgtaaacatttctaaaaaaaagtggaagtctttgataaagacgtattttatcaagaagagt 24189396  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 17349539 - 17349625
Alignment:
Q  330 tgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgataaggatgttttctatcaagaagagtggaggtaccct 417  Q
    ||||||||||||||||||||||||||||||| | ||| || ||||| |||||||  | |||||||||||| ||||||||| |||||||    
T  17349539 tgtaatcataaaaatttgtaaacatttttcatc-atagtgaaagtctttgataaatacgttttctatcaaaaagagtggatgtaccct 17349625  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 382
Target Start/End: Original strand, 30074336 - 30074434
Alignment:
Q  283 gttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaataatggaagtccttgata 382  Q
    ||||| ||||||||||||| |||||||||||  ||||||| ||    ||||||||||| || |||||| ||  |||||||||||||| | ||||||||||    
T  30074336 gttgtcgttgcttaggattaaagattagggttatcgagggaattctttgtaatcataacaa-ttgtaatcaaatttcaacaataatgcatgtccttgata 30074434  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 20057186 - 20057104
Alignment:
Q  368 tggaagtccttgataaggatgttttctatcaagaagagtggaggtaccctgaaacgatgacgaaaggg-gaaccattataaat 449  Q
    ||||||||| |||||  || ||| |||||||||||||||||||||| |||||| | | || ||||||| |||||| |||||||    
T  20057186 tggaagtccatgatagagacgttctctatcaagaagagtggaggtatcctgaagcaaggatgaaagggagaaccactataaat 20057104  T

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Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 225644 - 225792
Alignment:
Q  267 cttgaagattgatggtgttgtggttgcttaggattgaagattagggtgttcgaggggatatcatgtaatcataaaaatttgtaaacatttttcaacaata 366  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||  | | | |  || |  ||||||||||| ||||||  |||||||||||||| ||    
T  225644 cttgaagattggtggtagtgtggttgcttaggattgaagattagggaat-caaagaaatcttttgtaatcataacaatttgctaacatttttcaaca-ta 225741  T
Q  367 atggaagtccttgataaggatgttttctatcaagaagagtggaggtaccct 417  Q
     || ||||||||||||  || ||||||||||||||| | |||| |||||||    
T  225742 gtgaaagtccttgatagagacgttttctatcaagaataatggatgtaccct 225792  T

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Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 225416 - 225499
Alignment:
Q  48 tacattagtttctttcgaggaacttgattgaggatcaagtgtctaaaagaaaagagggatttctttccacatccaaggggaatt 131  Q
    |||||| ||||||||| |||| ||||||||||||||||  ||||||| |||||||  ||| | ||| ||| |||||||||||||    
T  225416 tacattggtttctttcaaggatcttgattgaggatcaatggtctaaaggaaaagaaagatctattttcacctccaaggggaatt 225499  T

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