View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_low_29 (Length: 371)
Name: NF12055_low_29
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 41848064 - 41848406
Alignment:
| Q |
18 |
actcatacgaactaaactcattcaaacgccaaattgattcagctatagctaactcaccaagaacacattccatgcctcatttaccacaacgtacactcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41848064 |
actcatacgaactaaactcattcaaacgccaaattgattcagctatagctaactcaccaagaacacattccatgcctcatttaccacaacgtacactcca |
41848163 |
T |
|
| Q |
118 |
atttcaagttcaacctcaacctcaaaatcatgagccaacctcttctcttgtcatcaacaacaagtcaacttttaagatctctcgtacctttcaaaaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41848164 |
atttcaagttcaacctcaacctcaaaatcatgagccaacctcttctcttgtcatcaacaacaagtcaactttcaagatctctcgtacctttcaaaaactt |
41848263 |
T |
|
| Q |
218 |
gttcgctttgttttcaagtccagtgccaataaatccaacaaggttaattctagcagctcgtatagcaatagttttcgatcatatcctaaagatcaagaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41848264 |
gttcgctttgttttcaagtccagtgccaataaatccaacaaggttaattctagcagctcgtatagcaatagttttcgatcatatcctaaagatcaagaac |
41848363 |
T |
|
| Q |
318 |
aacgtttatgtatggtttatgacaaatatgagtcagagcctat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41848364 |
aacgtttatgtatggtttatgacaaatatgagtcagaacctat |
41848406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University