View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_3 (Length: 976)

Name: NF12055_low_3
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_3
NF12055_low_3
[»] chr2 (32 HSPs)
chr2 (19-963)||(32177692-32178628)
chr2 (426-724)||(32186860-32187154)
chr2 (805-958)||(32159061-32159213)
chr2 (830-958)||(32175366-32175493)
chr2 (515-713)||(36711341-36711547)
chr2 (813-918)||(32111663-32111767)
chr2 (839-958)||(32119732-32119850)
chr2 (830-958)||(32183387-32183514)
chr2 (837-958)||(32205346-32205466)
chr2 (738-794)||(8039869-8039924)
chr2 (739-795)||(16940440-16940496)
chr2 (739-795)||(17011105-17011161)
chr2 (837-918)||(32211107-32211187)
chr2 (738-794)||(34682567-34682622)
chr2 (756-795)||(36757992-36758031)
chr2 (739-794)||(39482746-39482800)
chr2 (756-795)||(42039900-42039939)
chr2 (754-795)||(20522045-20522086)
chr2 (58-115)||(32186117-32186174)
chr2 (754-794)||(10445678-10445718)
chr2 (756-795)||(13569155-13569194)
chr2 (756-795)||(23078703-23078742)
chr2 (756-794)||(10707485-10707523)
chr2 (754-795)||(17865028-17865069)
chr2 (754-795)||(21629776-21629816)
chr2 (758-795)||(28259408-28259445)
chr2 (754-795)||(33528852-33528893)
chr2 (756-795)||(34388686-34388725)
chr2 (753-795)||(8390384-8390426)
chr2 (760-793)||(11099163-11099196)
chr2 (754-795)||(40014753-40014794)
chr2 (441-494)||(41545610-41545663)
[»] chr4 (19 HSPs)
chr4 (739-794)||(3796754-3796808)
chr4 (739-795)||(54866993-54867048)
chr4 (739-794)||(24333621-24333675)
chr4 (737-795)||(25862253-25862310)
chr4 (558-622)||(46676339-46676402)
chr4 (756-795)||(16624240-16624279)
chr4 (756-795)||(16630911-16630950)
chr4 (754-795)||(10047204-10047245)
chr4 (756-795)||(5147504-5147543)
chr4 (756-795)||(8689709-8689748)
chr4 (447-494)||(51421935-51421982)
chr4 (756-794)||(38152672-38152710)
chr4 (756-789)||(5397069-5397102)
chr4 (754-791)||(39245818-39245855)
chr4 (755-795)||(34496054-34496093)
chr4 (756-795)||(5143086-5143125)
chr4 (754-795)||(1983530-1983570)
chr4 (760-793)||(29760470-29760503)
chr4 (754-795)||(42599808-42599849)
[»] chr8 (13 HSPs)
chr8 (738-795)||(9766051-9766107)
chr8 (739-794)||(6127029-6127083)
chr8 (754-794)||(5702715-5702755)
chr8 (756-795)||(19175988-19176027)
chr8 (739-795)||(4455838-4455894)
chr8 (754-794)||(26403463-26403503)
chr8 (754-795)||(4696834-4696875)
chr8 (758-795)||(7412166-7412203)
chr8 (756-794)||(28307384-28307421)
chr8 (754-795)||(6813503-6813543)
chr8 (760-793)||(10689379-10689412)
chr8 (739-796)||(23799808-23799863)
chr8 (760-793)||(36979205-36979238)
[»] chr7 (22 HSPs)
chr7 (739-795)||(29159613-29159668)
chr7 (739-795)||(49091472-49091528)
chr7 (754-795)||(4796901-4796942)
chr7 (754-795)||(46516542-46516583)
chr7 (739-791)||(2647962-2648013)
chr7 (754-795)||(9235788-9235829)
chr7 (754-795)||(23403244-23403285)
chr7 (754-794)||(20283914-20283954)
chr7 (755-794)||(9190240-9190279)
chr7 (454-493)||(31681057-31681096)
chr7 (756-795)||(35960641-35960680)
chr7 (754-796)||(3047077-3047118)
chr7 (754-787)||(55764-55797)
chr7 (758-795)||(2479168-2479205)
chr7 (754-795)||(33332681-33332722)
chr7 (454-494)||(26332910-26332950)
chr7 (454-494)||(44951360-44951400)
chr7 (755-794)||(9185395-9185434)
chr7 (452-495)||(44401162-44401205)
chr7 (760-793)||(2057786-2057819)
chr7 (758-795)||(44848916-44848953)
chr7 (758-795)||(47263509-47263546)
[»] chr3 (27 HSPs)
chr3 (739-795)||(3323784-3323839)
chr3 (754-796)||(18554507-18554549)
chr3 (753-794)||(3716225-3716266)
chr3 (756-795)||(30710012-30710051)
chr3 (739-794)||(47649551-47649605)
chr3 (756-794)||(27026772-27026810)
chr3 (756-794)||(36028932-36028970)
chr3 (738-795)||(1417075-1417132)
chr3 (754-795)||(1417710-1417751)
chr3 (754-795)||(26298807-26298848)
chr3 (739-795)||(24695384-24695439)
chr3 (739-795)||(47924090-47924146)
chr3 (754-793)||(16264174-16264213)
chr3 (739-794)||(27038100-27038155)
chr3 (754-795)||(6794933-6794974)
chr3 (423-492)||(33271916-33271985)
chr3 (754-795)||(37466116-37466157)
chr3 (754-795)||(48438039-48438080)
chr3 (454-494)||(38850326-38850366)
chr3 (454-494)||(54365012-54365052)
chr3 (754-795)||(21711050-21711092)
chr3 (760-794)||(28504090-28504124)
chr3 (754-795)||(40593004-40593048)
chr3 (760-793)||(7167072-7167105)
chr3 (760-793)||(30236448-30236481)
chr3 (457-494)||(30797862-30797899)
chr3 (454-495)||(49042141-49042182)
[»] chr5 (17 HSPs)
chr5 (739-794)||(3880113-3880167)
chr5 (754-796)||(10281687-10281729)
chr5 (754-795)||(11182065-11182106)
chr5 (754-795)||(19588571-19588612)
chr5 (506-625)||(13638652-13638768)
chr5 (756-795)||(14520056-14520095)
chr5 (756-795)||(42126638-42126677)
chr5 (754-796)||(42127639-42127681)
chr5 (754-795)||(28832085-28832126)
chr5 (756-795)||(11917206-11917245)
chr5 (756-793)||(213790-213827)
chr5 (649-694)||(13638576-13638621)
chr5 (754-794)||(17004192-17004232)
chr5 (754-784)||(24555833-24555863)
chr5 (754-784)||(24596864-24596894)
chr5 (739-796)||(6741665-6741720)
chr5 (760-793)||(31180100-31180133)
[»] scaffold0148 (1 HSPs)
scaffold0148 (753-794)||(10551-10592)
[»] chr6 (15 HSPs)
chr6 (754-795)||(5572827-5572868)
chr6 (738-795)||(31086693-31086750)
chr6 (754-795)||(18232670-18232711)
chr6 (754-790)||(21801584-21801620)
chr6 (756-795)||(5017703-5017742)
chr6 (756-794)||(31936414-31936452)
chr6 (758-795)||(21355867-21355904)
chr6 (754-795)||(31979338-31979379)
chr6 (754-790)||(4629786-4629822)
chr6 (754-790)||(24436202-24436238)
chr6 (456-494)||(7513029-7513067)
chr6 (460-494)||(30700434-30700468)
chr6 (758-795)||(5757707-5757744)
chr6 (754-795)||(10077396-10077437)
chr6 (756-793)||(30126031-30126067)
[»] chr1 (18 HSPs)
chr1 (754-795)||(775497-775538)
chr1 (756-795)||(29651637-29651676)
chr1 (754-795)||(13598221-13598262)
chr1 (754-795)||(16124748-16124789)
chr1 (757-794)||(26645129-26645166)
chr1 (759-795)||(47099054-47099090)
chr1 (756-795)||(21536800-21536839)
chr1 (755-794)||(27104601-27104640)
chr1 (756-795)||(40816964-40817003)
chr1 (756-794)||(47704170-47704208)
chr1 (754-795)||(19072751-19072792)
chr1 (754-795)||(19120641-19120682)
chr1 (758-795)||(37069597-37069634)
chr1 (754-794)||(9476087-9476127)
chr1 (738-785)||(3281519-3281566)
chr1 (754-792)||(9024064-9024102)
chr1 (452-494)||(40568445-40568487)
chr1 (754-784)||(47704222-47704252)
[»] scaffold0006 (2 HSPs)
scaffold0006 (754-795)||(5506-5547)
scaffold0006 (754-795)||(2317-2358)
[»] scaffold0176 (1 HSPs)
scaffold0176 (754-795)||(17091-17132)
[»] scaffold0087 (2 HSPs)
scaffold0087 (758-795)||(44190-44227)
scaffold0087 (756-795)||(37063-37102)
[»] scaffold0036 (1 HSPs)
scaffold0036 (756-795)||(85512-85551)


Alignment Details
Target: chr2 (Bit Score: 770; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 19 - 963
Target Start/End: Original strand, 32177692 - 32178628
Alignment:
Q  19 atattaggtgaacatgacatgagaataccaaannnnnnncttgtaaatattaacaataggtcaaactcatgggcttatatagggagtgtacccacgaaac 118  Q
    ||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  32177692 atattaggtgaacataacatgagaataccaaatttttttcttgtaaatattaacaataggtcaaactcatgggcttatataggg--tgtacccacgaaac 32177789  T
Q  119 ctgtatagtcgtctnnnnnnnnttatttcattgca-cccctttgataaaatactcatgaaattgttcaaactctttaaaaattgagtaatgctacatct- 216  Q
    ||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  32177790 ctgtatagtcgtctaaaaaaaattatttcattgcaacccctttgataaaatactcatgaaattgttcaaactctttaaaaaatgagtaatgctacttctc 32177889  T
Q  217 gcgaaaaacatccttgcggaaatgttgtcatcgactagtttctaatttctaatttttatccaaccatcgatgatttccaccaaagaagatccaatggcag 316  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32177890 gcgaaaaacatccttgcagaaatgttgtcgccgactagtttctaatttctaatttttatccaaccatcgatgatttccaccaaagaagatccaatggtag 32177989  T
Q  317 caatcaatttgtgagacgttcgtgatattttgttttgctataaataatgttgcttttagaaatgagtaatgctacttaacccgaaaaactcccttgctaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32177990 caatcaatttgtgagacgttcgtgatattttgttttgctataaataatgttgcttttagaaatgagtaatgctacttaacccgaaaaactcccttgctaa 32178089  T
Q  417 aatgtcacaaccaagctttactatattaaatgagattggctacatagatcaaattacgtcatagtattctatcataaaaactgacagattcacattggct 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32178090 aatgtcacaaccaagctttactatattaaatgagattggctacatagatcaaattacgtcatagtattctatcataaaaagtgacagattcacattggct 32178189  T
Q  517 actatataggccaaagccctcactccatttctcatttacttacttgcttatatatgtctcattcataaatttggcaccacctctagaagagaaaaggcaa 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||    
T  32178190 actatataggccaaagccctcactccatttctcatttacttacttgc---------------tcataaatttggcaccacctctagaagagaaaaggcaa 32178274  T
Q  617 catatgtacaacttctagtccttttggtgtgtttttaattattggtaagattcttacatttgatgagatatggtatgataatttgtttataagtgtgagc 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178275 catatgtacaacttctagtccttttggtgtgtttttaattattggtaagattcttacatttgatgagatatggtatgataatttgtttataagtgtgagc 32178374  T
Q  717 actc-------ttcaagtggttttgtaggtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaagatgttgtgaattat 809  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178375 actcttcatctttcaagtggttttgtaggtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaagatgttgtgaattat 32178474  T
Q  810 cgtaatgtctaattcttgatgagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaa 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178475 cgtaatgtctaattcttgatgagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaa 32178574  T
Q  910 tattgaatgcactctctttatgatcctcagatttgcctaccttaactctctgct 963  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32178575 tattgaatgcactctctttatgatcctcagatttgcgtaccttaactctctgct 32178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 426 - 724
Target Start/End: Original strand, 32186860 - 32187154
Alignment:
Q  426 accaagctttactatattaaatgagattggctacatagatcaaattacgtcatagtattctatcataaaaactgacagattcacattggctactatatag 525  Q
    ||||||||||||  |||||||| |||||||||||||| || ||||||||| ||||| |||||||||||||| |||| ||| ||| ||||||||||| |||    
T  32186860 accaagctttaccgtattaaataagattggctacataaattaaattacgttatagtgttctatcataaaaagtgacggatccacgttggctactatgtag 32186959  T
Q  526 gccaaagccctcactccatttctcatttacttacttgcttatatatgtctcattcataaatttggcaccacctctagaagagaaaaggcaacatatgtac 625  Q
    ||||| ||| ||| | ||||||||||     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  32186960 gccaaggccatcatttcatttctcat----atacttgcttatatatgtctcatgcataaatttggcaccacctctagaagagaaaaggaaacatatgtac 32187055  T
Q  626 aacttctagtccttttggtgtgtttttaattattggtaagattcttacatttgatgagatatggtatgataatttgtttataagtgtgagcactcttca 724  Q
    ||| | ||  ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  32187056 aacctttatcccttttgttgtgtttttaattattgataagattcttacacttgatgagatatggtatgataatgagtttataggtgtgagcactcttca 32187154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 805 - 958
Target Start/End: Original strand, 32159061 - 32159213
Alignment:
Q  805 attatcgtaatgtctaattcttgatgagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttct 904  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32159061 attatcgtaatgtctaattcttgatgagtcgacttgtatacatattagtttccactttacactaacaccttc-aaaaacatcactcacttcttcatttct 32159159  T
Q  905 atcaatattgaatgcactctctttatgatcctcagatttgcctaccttaactct 958  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  32159160 atcaatattgaatgcaagctctttatgatcctcagatttgcttaccttaactct 32159213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 830 - 958
Target Start/End: Original strand, 32175366 - 32175493
Alignment:
Q  830 gagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatattgaatgcactctcttta 929  Q
    ||||| |||||||| || ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32175366 gagtccacttgtatgcaaattagtttccactttacactaacacctccaaaa-acatcactcacttcttcatttctatcaatattgaatgcaatctcttta 32175464  T
Q  930 tgatcctcagatttgcctaccttaactct 958  Q
    |||||||||||||||||||||||||||||    
T  32175465 tgatcctcagatttgcctaccttaactct 32175493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 515 - 713
Target Start/End: Original strand, 36711341 - 36711547
Alignment:
Q  515 ctactatataggccaaagccctcactccatttctcatttacttacttgcttatatatgtctcattcataaatttggcaccacctctagaagagaaaaggc 614  Q
    ||||||| |||||||| |||||| || ||| ||||||||||||    | |||||| |||||||| |||| |||||||| ||||||||||||||||||| |    
T  36711341 ctactatgtaggccaaggccctctcttcatctctcatttactt----gtttatatttgtctcatgcatacatttggcatcacctctagaagagaaaagac 36711436  T
Q  615 aacatatgtacaacttctagtccttttggtgtgt------------ttttaattattggtaagattcttacatttgatgagatatggtatgataatttgt 702  Q
    |||||||||||||| ||||| ||||||| |||||            |||||||||||||||||| |||||  ||||| |||||||||||||||||| |||    
T  36711437 aacatatgtacaacctctagcccttttgttgtgtttttaattaatattttaattattggtaagaatcttatgtttgacgagatatggtatgataatgtgt 36711536  T
Q  703 ttataagtgtg 713  Q
    |||||||||||    
T  36711537 ttataagtgtg 36711547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 813 - 918
Target Start/End: Original strand, 32111663 - 32111767
Alignment:
Q  813 aatgtctaattcttgatgagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatat 912  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||    
T  32111663 aatgtcgaactcttgatgagtcgacttgtatgcatattagtttccactttacactaacaccttc-aaaaacatcactcacttcttcatctctatctagat 32111761  T
Q  913 tgaatg 918  Q
    ||||||    
T  32111762 tgaatg 32111767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 839 - 958
Target Start/End: Original strand, 32119732 - 32119850
Alignment:
Q  839 tgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatattgaatgcactctctttatgatcctca 938  Q
    ||||| || |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||  || ||||||||| |||    
T  32119732 tgtatgcaaattagtttccactttacactaataccttcaaaa-acatcactcacttcttcatttctatcaatattgaattcaagctttttatgatcttca 32119830  T
Q  939 gatttgcctaccttaactct 958  Q
    ||||||||| | ||||||||    
T  32119831 gatttgcctgctttaactct 32119850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 830 - 958
Target Start/End: Original strand, 32183387 - 32183514
Alignment:
Q  830 gagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatattgaatgcactctcttta 929  Q
    ||||| |||| ||| || |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||| |  |||||||    
T  32183387 gagtccacttctatgcaaattagtttccactttacactaataccttcgaaaa-catcactcacttcttcatttctatctatattgaatgaaagctcttta 32183485  T
Q  930 tgatcctcagatttgcctaccttaactct 958  Q
     | ||| ||||||||| ||| ||||||||    
T  32183486 cggtccccagatttgcttactttaactct 32183514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 837 - 958
Target Start/End: Complemental strand, 32205466 - 32205346
Alignment:
Q  837 cttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatattgaatgcactctctttatgatcct 936  Q
    ||||||| ||||||| |||||||||||| |||| ||||||||||  |||||||||||||||||  ||||||||||||||||| |  || ||||||||| |    
T  32205466 cttgtatgcatattaatttccactttactctaataccttcaaaat-catcactcacttcttcacctctatcaatattgaatgaaagctttttatgatcat 32205368  T
Q  937 cagatttgcctaccttaactct 958  Q
     |||||||| ||| ||||||||    
T  32205367 gagatttgcttactttaactct 32205346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 794
Target Start/End: Original strand, 8039869 - 8039924
Alignment:
Q  738 gtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  8039869 gtgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 8039924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 795
Target Start/End: Complemental strand, 16940496 - 16940440
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  16940496 tgttgtgaattcggtacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 16940440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 795
Target Start/End: Complemental strand, 17011161 - 17011105
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  17011161 tgttgtgaattcggtacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 17011105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 837 - 918
Target Start/End: Complemental strand, 32211187 - 32211107
Alignment:
Q  837 cttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatattgaatg 918  Q
    ||||||| ||||||| ||||||||||||  ||| ||||||||||  |||||||||||||||||  |||||||||||||||||    
T  32211187 cttgtatgcatattaatttccactttactgtaataccttcaaaat-catcactcacttcttcacctctatcaatattgaatg 32211107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 738 - 794
Target Start/End: Complemental strand, 34682622 - 34682567
Alignment:
Q  738 gtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  34682622 gtgttgtgaatt-cgtacaaaaccacaccaatgaataacaaagatgtgtggagcaaa 34682567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 36758031 - 36757992
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36758031 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 36757992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 739 - 794
Target Start/End: Original strand, 39482746 - 39482800
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  39482746 tgttgtgaatt-cagacaaaatcacacaaatgaataacaaagatgtgtggagcaaa 39482800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 42039939 - 42039900
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42039939 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 42039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 20522045 - 20522086
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20522045 acaaaatcacaccaatgaataacaaagatgtgtggagaaaag 20522086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 32186117 - 32186174
Alignment:
Q  58 cttgtaaatattaacaataggtcaaactcatgggcttatatagggagtgtacccacga 115  Q
    |||||||||||||||||| ||||||||| | || |||||||||| |||||||||||||    
T  32186117 cttgtaaatattaacaatgggtcaaactaacggacttatataggaagtgtacccacga 32186174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 754 - 794
Target Start/End: Complemental strand, 10445718 - 10445678
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  10445718 acaaaatcacaccaatgaaaaacaaagatgtgtggagcaaa 10445678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 13569155 - 13569194
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13569155 aaaatcacaccaatgaataacaaagatgtgtggagtaaag 13569194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 23078742 - 23078703
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  23078742 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaag 23078703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 794
Target Start/End: Complemental strand, 10707523 - 10707485
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10707523 aaaatcacacccatgaataacaaagatgtgtggagcaaa 10707485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 17865028 - 17865069
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  17865028 acaaaatcacaccaatgaataacaaaaatgtgtggagaaaag 17865069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 21629776 - 21629816
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  21629776 acaaaatcacaccaatgaa-aacaaagatgtgtggagcaaag 21629816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Complemental strand, 28259445 - 28259408
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28259445 aatcacaccaatgaaaaacaaagatgtgtggagcaaag 28259408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 33528893 - 33528852
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  33528893 acaaaattccaccaatgaataacaaagatgtgtggagcaaag 33528852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 34388686 - 34388725
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  34388686 aaaatcacaccaataaataacgaagatgtgtggagcaaag 34388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 753 - 795
Target Start/End: Complemental strand, 8390426 - 8390384
Alignment:
Q  753 tacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||| || |||||||||||||| ||||    
T  8390426 tacaaaatcacaccaatgaaaaataaagatgtgtggagtaaag 8390384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Complemental strand, 11099196 - 11099163
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||| ||||||||||||||||||||    
T  11099196 tcacaccaatgaaaaacaaagatgtgtggagcaa 11099163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 40014753 - 40014794
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||  ||||||||||| ||||||||||    
T  40014753 acaaaatcacaccaatgacaaacaaagatgtatggagcaaag 40014794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 41545663 - 41545610
Alignment:
Q  441 attaaatgagattggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    ||||| |||||| ||||| ||| ||||||||| |||||||| ||||||||||||    
T  41545663 attaagtgagatcggctaaataaatcaaattaagtcatagtgttctatcataaa 41545610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 739 - 794
Target Start/End: Complemental strand, 3796808 - 3796754
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3796808 tgttgtgaatt-catacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 3796754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 795
Target Start/End: Original strand, 54866993 - 54867048
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  54866993 tgttgtgaatt-cagacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 54867048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 739 - 794
Target Start/End: Original strand, 24333621 - 24333675
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  24333621 tgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 24333675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 737 - 795
Target Start/End: Complemental strand, 25862310 - 25862253
Alignment:
Q  737 ggtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  25862310 ggtgttgtgaatt-cggacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 25862253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 558 - 622
Target Start/End: Original strand, 46676339 - 46676402
Alignment:
Q  558 acttgcttatatatgtctcattcataaatttggcaccacctctagaagagaaaaggcaacatatg 622  Q
    |||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||| ||||||||    
T  46676339 acttgcttatat-tgtctcatgcataaatttagcaccacatctagaagagaaaaggaaacatatg 46676402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 16624279 - 16624240
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16624279 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 16624240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 16630950 - 16630911
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16630950 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 16630911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 10047204 - 10047245
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  10047204 acaaaatcacaccaatgaataacaaaaatgtgtggagcaaag 10047245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 5147504 - 5147543
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  5147504 aaaatcacaccaatgaataacaatgatgtgtggagcaaag 5147543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 8689748 - 8689709
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8689748 aaaatcacaccaatgaataacaaagatgtgtggagtaaag 8689709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 51421982 - 51421935
Alignment:
Q  447 tgagattggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  51421982 tgagattggctacatggatcaaattacgtcataatgttctatcataaa 51421935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 794
Target Start/End: Complemental strand, 38152710 - 38152672
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  38152710 aaaatcacaccaatgaataacaaagatgtgtagagcaaa 38152672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 756 - 789
Target Start/End: Complemental strand, 5397102 - 5397069
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtgga 789  Q
    ||||||||||||||||||||||||||||||||||    
T  5397102 aaaatcacaccaatgaataacaaagatgtgtgga 5397069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 791
Target Start/End: Original strand, 39245818 - 39245855
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagc 791  Q
    |||||||||||||||||||||| |||||||||||||||    
T  39245818 acaaaatcacaccaatgaataataaagatgtgtggagc 39245855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 795
Target Start/End: Complemental strand, 34496093 - 34496054
Alignment:
Q  755 caaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  34496093 caaaatcacaccaatgaa-aacaaagatgtgtggagcaaag 34496054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 5143086 - 5143125
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  5143086 aaaatcaaaccaatgaataacaatgatgtgtggagcaaag 5143125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 1983570 - 1983530
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  1983570 acaaaatcacacaaatgaa-aacaaagatgtgtggagcaaag 1983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Original strand, 29760470 - 29760503
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||| ||||||||||||||||||||    
T  29760470 tcacaccaatgaaaaacaaagatgtgtggagcaa 29760503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 42599849 - 42599808
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||| ||||||||| ||||||||||| |||||||    
T  42599849 acaaaatcacactaatgaataataaagatgtgtgaagcaaag 42599808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 738 - 795
Target Start/End: Complemental strand, 9766107 - 9766051
Alignment:
Q  738 gtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  9766107 gtgttgtgaatt-cagacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 9766051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 739 - 794
Target Start/End: Original strand, 6127029 - 6127083
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  6127029 tgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 6127083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 754 - 794
Target Start/End: Complemental strand, 5702755 - 5702715
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5702755 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 5702715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 19176027 - 19175988
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19176027 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 19175988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 739 - 795
Target Start/End: Original strand, 4455838 - 4455894
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| | |  ||||||||||||||||||| ||||||||||||||||||||    
T  4455838 tgttgtgaattcccttaaaaatcacaccaatgaatatcaaagatgtgtggagcaaag 4455894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 754 - 794
Target Start/End: Complemental strand, 26403503 - 26403463
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  26403503 acaaaaccacaccaatgaataacaaagatgtgtggagcaaa 26403463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 4696875 - 4696834
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  4696875 acaaaatcacatcaatgaataacaaagatgtgtggaacaaag 4696834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 7412166 - 7412203
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7412166 aatcacaccaatgaaaaacaaagatgtgtggagcaaag 7412203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 756 - 794
Target Start/End: Original strand, 28307384 - 28307421
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  28307384 aaaatcacaccaatgaa-aacaaagatgtgtggagcaaa 28307421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 6813503 - 6813543
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  6813503 acaaaatcacaccaatgaa-aacaaagatgtgttgagcaaag 6813543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Complemental strand, 10689412 - 10689379
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||| ||||||||||||||||||||    
T  10689412 tcacaccaatgaaaaacaaagatgtgtggagcaa 10689379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 739 - 796
Target Start/End: Complemental strand, 23799863 - 23799808
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 796  Q
    ||||||||||| | |||||||||||||||||||| || ||| ||||||||||||||||    
T  23799863 tgttgtgaatt-cgtacaaaatcacaccaatgaa-aaaaaatatgtgtggagcaaaga 23799808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Original strand, 36979205 - 36979238
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||| ||||||||||||||||||||    
T  36979205 tcacaccaatgaaaaacaaagatgtgtggagcaa 36979238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 795
Target Start/End: Original strand, 29159613 - 29159668
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  29159613 tgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 29159668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 795
Target Start/End: Original strand, 49091472 - 49091528
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  49091472 tgttgtgaattcggtacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 49091528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 4796942 - 4796901
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4796942 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 4796901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 46516583 - 46516542
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46516583 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 46516542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 739 - 791
Target Start/End: Complemental strand, 2648013 - 2647962
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagc 791  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  2648013 tgttgtgaatt-cagacaaaatcacaccaatgaataacaaagatgtgtggagc 2647962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 9235829 - 9235788
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  9235829 acaaaatcacaccaataaataacaaagatgtgtggagcaaag 9235788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 23403285 - 23403244
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  23403285 acaaaatcataccaatgaataacaaagatgtgtggagcaaag 23403244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 754 - 794
Target Start/End: Original strand, 20283914 - 20283954
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  20283914 acaaaatcacacctatgaataacaaagatgtgtggagcaaa 20283954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 755 - 794
Target Start/End: Complemental strand, 9190279 - 9190240
Alignment:
Q  755 caaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  9190279 caaaatcacaccaatgaaaaacaaagatgtgtggagcaaa 9190240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 31681057 - 31681096
Alignment:
Q  454 ggctacatagatcaaattacgtcatagtattctatcataa 493  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  31681057 ggctacatggatcaaattacgtcatagtattctatcataa 31681096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 35960641 - 35960680
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  35960641 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaag 35960680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 754 - 796
Target Start/End: Original strand, 3047077 - 3047118
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 796  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  3047077 acaaaatcacaccaatgaa-aacaaagatgtgtggagcaaaga 3047118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 787
Target Start/End: Original strand, 55764 - 55797
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtg 787  Q
    ||||||||||||||||||||||||||||||||||    
T  55764 acaaaatcacaccaatgaataacaaagatgtgtg 55797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 2479168 - 2479205
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2479168 aatcacaccaatgaaaaacaaagatgtgtggagcaaag 2479205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 33332722 - 33332681
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  33332722 acaaaatcacaccaatgaataaccaagatgtgtggaccaaag 33332681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 26332910 - 26332950
Alignment:
Q  454 ggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  26332910 ggctacatggatcaaattacgtcataatattctatcataaa 26332950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 44951400 - 44951360
Alignment:
Q  454 ggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  44951400 ggctacatggatcaaattacgtcatagtgttctatcataaa 44951360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 794
Target Start/End: Complemental strand, 9185434 - 9185395
Alignment:
Q  755 caaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  9185434 caaaatcacactaatgaaaaacaaagatgtgtggagcaaa 9185395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 44401162 - 44401205
Alignment:
Q  452 ttggctacatagatcaaattacgtcatagtattctatcataaaa 495  Q
    |||||||||| ||||||||||||||||| | |||||||||||||    
T  44401162 ttggctacatggatcaaattacgtcataatgttctatcataaaa 44401205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Original strand, 2057786 - 2057819
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||| ||||||||||||||||||||    
T  2057786 tcacaccaatgaaaaacaaagatgtgtggagcaa 2057819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 795
Target Start/End: Complemental strand, 44848953 - 44848916
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  44848953 aatcacaccaatgaaaaacaaggatgtgtggagcaaag 44848916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 47263509 - 47263546
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  47263509 aatcacaccaatgaaaaacaaagatgcgtggagcaaag 47263546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 795
Target Start/End: Complemental strand, 3323839 - 3323784
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  3323839 tgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 3323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 754 - 796
Target Start/End: Complemental strand, 18554549 - 18554507
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 796  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18554549 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 18554507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 753 - 794
Target Start/End: Complemental strand, 3716266 - 3716225
Alignment:
Q  753 tacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3716266 tacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 3716225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 30710051 - 30710012
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30710051 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 30710012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 739 - 794
Target Start/End: Original strand, 47649551 - 47649605
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||    
T  47649551 tgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggaacaaa 47649605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 756 - 794
Target Start/End: Original strand, 27026772 - 27026810
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27026772 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 27026810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 756 - 794
Target Start/End: Original strand, 36028932 - 36028970
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36028932 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 36028970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 738 - 795
Target Start/End: Original strand, 1417075 - 1417132
Alignment:
Q  738 gtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||| |  |||||||||||||||||||||| |||||||||||||| ||||    
T  1417075 gtgttgtgaattccggacaaaatcacaccaatgaataataaagatgtgtggagtaaag 1417132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 1417751 - 1417710
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  1417751 acaaaatcacaccaatgaaaaacaaagatgtgtggagcaaag 1417710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 26298807 - 26298848
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  26298807 acaaaatcacaccaatgaataacaaagatgtgtggatcaaag 26298848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 739 - 795
Target Start/End: Complemental strand, 24695439 - 24695384
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||    
T  24695439 tgttgtgaatt-cgtacaaaatcacacaaatgaataataaagatgtgtggagcaaag 24695384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 739 - 795
Target Start/End: Complemental strand, 47924146 - 47924090
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||   ||| |||||||||||||||||||||||||||||||||| ||||    
T  47924146 tgttgtgaattcggtactaaatcacaccaatgaataacaaagatgtgtggagtaaag 47924090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 793
Target Start/End: Original strand, 16264174 - 16264213
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  16264174 acaaaatcacaccaatgaataacaaagacgtgtggagcaa 16264213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 739 - 794
Target Start/End: Original strand, 27038100 - 27038155
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||   || ||||||||||||||||||||| |||||||||||||||||    
T  27038100 tgttgtgaattcggtaaaaaatcacaccaatgaataactaagatgtgtggagcaaa 27038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 6794974 - 6794933
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  6794974 acaaaatcacaccaatgaaaaacaacgatgtgtggagcaaag 6794933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 492
Target Start/End: Original strand, 33271916 - 33271985
Alignment:
Q  423 acaaccaagctttactatattaaatgagattggctacatagatcaaattacgtcatagtattctatcata 492  Q
    ||||| ||||||||   |||||| || | ||||||||||||||||||| |||||||||| ||||||||||    
T  33271916 acaactaagctttatcttattaagtggggttggctacatagatcaaatgacgtcatagtgttctatcata 33271985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 37466116 - 37466157
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  37466116 acaaaatcacaccaataaataacaaagatgtgaggagcaaag 37466157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 48438039 - 48438080
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  48438039 acaaaatcacatcaatgaataacaaggatgtgtggagcaaag 48438080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 38850366 - 38850326
Alignment:
Q  454 ggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  38850366 ggctacatggatcaaattacgtcatagtgttctatcataaa 38850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 54365012 - 54365052
Alignment:
Q  454 ggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  54365012 ggctacatggatcaaattacgtcatagtgttctatcataaa 54365052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 21711050 - 21711092
Alignment:
Q  754 acaaaatcacaccaa-tgaataacaaagatgtgtggagcaaag 795  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  21711050 acaacatcacaccaaatgaataacaaagatgtgtggagcaaag 21711092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 760 - 794
Target Start/End: Complemental strand, 28504124 - 28504090
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||| |||||||||||||||    
T  28504124 tcacaccaatgaataacaatgatgtgtggagcaaa 28504090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 40593048 - 40593004
Alignment:
Q  754 acaaaatcacaccaatgaata---acaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||   |||||||||||||||||||||    
T  40593048 acaaaatcacaccaatgaataacaacaaagatgtgtggagcaaag 40593004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Original strand, 7167072 - 7167105
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||| ||||||||||||||||||||    
T  7167072 tcacaccaatgaaaaacaaagatgtgtggagcaa 7167105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Complemental strand, 30236481 - 30236448
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    |||||||||| |||||||||||||||||||||||    
T  30236481 tcacaccaataaataacaaagatgtgtggagcaa 30236448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 30797862 - 30797899
Alignment:
Q  457 tacatagatcaaattacgtcatagtattctatcataaa 494  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  30797862 tacatagatcaaattacgtcataatgttctatcataaa 30797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 49042182 - 49042141
Alignment:
Q  454 ggctacatagatcaaattacgtcatagtattctatcataaaa 495  Q
    |||||||| |||||||||||| |||||| |||||||||||||    
T  49042182 ggctacatggatcaaattacgccatagtgttctatcataaaa 49042141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 739 - 794
Target Start/End: Original strand, 3880113 - 3880167
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  3880113 tgttgtgaatt-cgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 3880167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 754 - 796
Target Start/End: Original strand, 10281687 - 10281729
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 796  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10281687 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 10281729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 11182106 - 11182065
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11182106 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 11182065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 19588571 - 19588612
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19588571 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 19588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 506 - 625
Target Start/End: Complemental strand, 13638768 - 13638652
Alignment:
Q  506 tcacattggctactatataggccaaagccctcactccatttctcatttacttacttgcttatatatgtctcattcataaatttggcaccacctctagaag 605  Q
    |||||||||| || || ||||||||  |||||||| | ||||||||||| ||    ||||||||||||||||| |||||||||| |||||||||   |||    
T  13638768 tcacattggccaccatgtaggccaagaccctcacttcttttctcatttattt----gcttatatatgtctcatgcataaatttgacaccacctccgaaag 13638673  T
Q  606 a-gaaaaggcaacatatgtac 625  Q
    |  ||||||||||||||||||    
T  13638672 ataaaaaggcaacatatgtac 13638652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 14520056 - 14520095
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14520056 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 14520095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 42126677 - 42126638
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42126677 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 42126638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 754 - 796
Target Start/End: Complemental strand, 42127681 - 42127639
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 796  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  42127681 acaaaatcacactaatgaataacaaagatgtgtggagcaaaga 42127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 28832085 - 28832126
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  28832085 acaaaatcataccaatgaataacaaagatgtgtggagcaaag 28832126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 11917245 - 11917206
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11917245 aaaatcacaccaatgaataacaaagatgtgtgaagcaaag 11917206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 756 - 793
Target Start/End: Complemental strand, 213827 - 213790
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  213827 aaaatcacaccaatgaataacaaagatgtgtagagcaa 213790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 694
Target Start/End: Complemental strand, 13638621 - 13638576
Alignment:
Q  649 ttttaattattggtaagattcttacatttgatgagatatggtatga 694  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||    
T  13638621 ttttaattattgccaagagtcttacatttgatgagatatggtatga 13638576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 754 - 794
Target Start/End: Complemental strand, 17004232 - 17004192
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  17004232 acaaaatcacaccaatgaaaaacaaagaggtgtggagcaaa 17004192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 784
Target Start/End: Complemental strand, 24555863 - 24555833
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgt 784  Q
    |||||||||||||||||||||||||||||||    
T  24555863 acaaaatcacaccaatgaataacaaagatgt 24555833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 784
Target Start/End: Complemental strand, 24596894 - 24596864
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgt 784  Q
    |||||||||||||||||||||||||||||||    
T  24596894 acaaaatcacaccaatgaataacaaagatgt 24596864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 739 - 796
Target Start/End: Original strand, 6741665 - 6741720
Alignment:
Q  739 tgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaaga 796  Q
    ||||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||    
T  6741665 tgttgtgaatt-cagacaaaataacatcaatgaa-aacaaagatgtgtggagcaaaga 6741720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 793
Target Start/End: Original strand, 31180100 - 31180133
Alignment:
Q  760 tcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||||||||| ||||||||||||||    
T  31180100 tcacaccaatgaataacaatgatgtgtggagcaa 31180133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 753 - 794
Target Start/End: Original strand, 10551 - 10592
Alignment:
Q  753 tacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10551 tacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 10592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 5572868 - 5572827
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5572868 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 5572827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 738 - 795
Target Start/End: Complemental strand, 31086750 - 31086693
Alignment:
Q  738 gtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||    
T  31086750 gtgttgtgaattcggtacaaaatcacaccaatgaagaacaaagatgtgtggagcaaag 31086693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 18232670 - 18232711
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  18232670 acaaaatcacaccaatgaataacaaagatgtgtgaagcaaag 18232711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 754 - 790
Target Start/End: Complemental strand, 21801620 - 21801584
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggag 790  Q
    |||||||||||||||||||||||||||||||||||||    
T  21801620 acaaaatcacaccaatgaataacaaagatgtgtggag 21801584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 5017742 - 5017703
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  5017742 aaaatcacactaatgaataacaaagatgtgtggagcaaag 5017703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 794
Target Start/End: Original strand, 31936414 - 31936452
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  31936414 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaa 31936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 21355867 - 21355904
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21355867 aatcacaccaatgaaaaacaaagatgtgtggagcaaag 21355904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 31979338 - 31979379
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  31979338 acaaaatcacaccactaaataacaaagatgtgtggagcaaag 31979379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 754 - 790
Target Start/End: Original strand, 4629786 - 4629822
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggag 790  Q
    |||||||||||||||||||||| ||||||||||||||    
T  4629786 acaaaatcacaccaatgaataataaagatgtgtggag 4629822  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 754 - 790
Target Start/End: Complemental strand, 24436238 - 24436202
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggag 790  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24436238 acaaaataacaccaatgaataacaaagatgtgtggag 24436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 494
Target Start/End: Original strand, 7513029 - 7513067
Alignment:
Q  456 ctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  7513029 ctacatagatcaaattacgtcataatgttctatcataaa 7513067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 30700434 - 30700468
Alignment:
Q  460 atagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||||||||||||||| ||||||||||||||    
T  30700434 atagatcaaattacgtcataatattctatcataaa 30700468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 795
Target Start/End: Complemental strand, 5757744 - 5757707
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  5757744 aatcacaccaatgaaaaacaaagaagtgtggagcaaag 5757707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 10077437 - 10077396
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  10077437 acaaaatcacactaatgaatagcgaagatgtgtggagcaaag 10077396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 756 - 793
Target Start/End: Complemental strand, 30126067 - 30126031
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaa 793  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30126067 aaaatcacaccaatgaa-aacaaagatgtgtggagcaa 30126031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 775497 - 775538
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  775497 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 775538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 29651637 - 29651676
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29651637 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 29651676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 13598221 - 13598262
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  13598221 acaaaatcacaccaatgaataacaaagatgtgtggagtaaag 13598262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Complemental strand, 16124789 - 16124748
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  16124789 acaaaatcacaccaatgaataacaaagatgtgtgaagcaaag 16124748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 757 - 794
Target Start/End: Complemental strand, 26645166 - 26645129
Alignment:
Q  757 aaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26645166 aaatcacaccaatgaataacaaagatgtgtggagcaaa 26645129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 795
Target Start/End: Complemental strand, 47099090 - 47099054
Alignment:
Q  759 atcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||||||||||||||||||||||||||||    
T  47099090 atcacaccaatgaataacaaagatgtgtggagcaaag 47099054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 21536839 - 21536800
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  21536839 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaag 21536800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 755 - 794
Target Start/End: Complemental strand, 27104640 - 27104601
Alignment:
Q  755 caaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27104640 caaaatcacaccaatgaaaaacaaagatgtgtggagcaaa 27104601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 40817003 - 40816964
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  40817003 aaaaacacaccaatgaataacaaagatgtgtggagcaaag 40816964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 794
Target Start/End: Complemental strand, 47704208 - 47704170
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  47704208 aaaatcacatcaatgaataacaaagatgtgtggagcaaa 47704170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 19072751 - 19072792
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  19072751 acaaaatcacaccaatgaataacaaagatatgtggaacaaag 19072792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 19120641 - 19120682
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  19120641 acaaaatcacaccaatgaataacaaagatatgtggaacaaag 19120682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 37069597 - 37069634
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  37069597 aatcacaccaatgaaaaacaaagatgtgtggagcaaag 37069634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 754 - 794
Target Start/End: Original strand, 9476087 - 9476127
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaa 794  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  9476087 acaaaatcacaccaatgaaaaacaaagatgtgtagagcaaa 9476127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 785
Target Start/End: Original strand, 3281519 - 3281566
Alignment:
Q  738 gtgttgtgaattgcatacaaaatcacaccaatgaataacaaagatgtg 785  Q
    |||||||||||| | |  ||||||||||||||||||||||||||||||    
T  3281519 gtgttgtgaattccgttaaaaatcacaccaatgaataacaaagatgtg 3281566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 792
Target Start/End: Complemental strand, 9024102 - 9024064
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagca 792  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  9024102 acaaaatcacaccaatgaaaaacaaagaagtgtggagca 9024064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 40568445 - 40568487
Alignment:
Q  452 ttggctacatagatcaaattacgtcatagtattctatcataaa 494  Q
    |||||||||| |||||||||||| |||||| ||||||||||||    
T  40568445 ttggctacatggatcaaattacgccatagttttctatcataaa 40568487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 784
Target Start/End: Complemental strand, 47704252 - 47704222
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgt 784  Q
    |||||||||||||||||||||||||||||||    
T  47704252 acaaaatcacaccaatgaataacaaagatgt 47704222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 5506 - 5547
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  5506 acaaaatcacaccaatgaataacaaagatgtgtggagtaaag 5547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 2317 - 2358
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  2317 acaaaatcacaccgaagaataacaaagatgtgtggagcaaag 2358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 17091 - 17132
Alignment:
Q  754 acaaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  17091 acaaaatcacatgaatgaataacaaagatgtgtggagcaaag 17132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Complemental strand, 44227 - 44190
Alignment:
Q  758 aatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  44227 aatcacaccaatgaaaaacaaagatgtgtggagcaaag 44190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 37102 - 37063
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  37102 aaaatcacaccgatgaaaaacaaagatgtgtggagcaaag 37063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 85512 - 85551
Alignment:
Q  756 aaaatcacaccaatgaataacaaagatgtgtggagcaaag 795  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  85512 aaaatcacaccaatgaaaaacaaagatgtgtagagcaaag 85551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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