View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_30 (Length: 369)
Name: NF12055_low_30
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 56069452 - 56069644
Alignment:
| Q |
30 |
aatacttatctcgatccatggtttcatatttccattata----gtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagcca |
125 |
Q |
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| T |
56069452 |
aatacttatctcgagccatggtttcatatttccattatatatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagcca |
56069551 |
T |
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| Q |
126 |
agacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
218 |
Q |
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| T |
56069552 |
agacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
56069644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 219 - 355
Target Start/End: Original strand, 56069678 - 56069810
Alignment:
| Q |
219 |
ggaaacatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgt |
318 |
Q |
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| T |
56069678 |
ggaaaaatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaat----taaagtgt |
56069773 |
T |
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| Q |
319 |
gcttaccagtttctgccatttgtggtacacctctgtg |
355 |
Q |
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| T |
56069774 |
gcttaccagtttctgccatttgtggtacacctctgtg |
56069810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 56069532 - 56069499
Alignment:
| Q |
1 |
aaccaaaaagatatcgaaagtgccgctgtaatac |
34 |
Q |
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| T |
56069532 |
aaccaaaaagatatcgaaagtgctgctgtaatac |
56069499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 38398880 - 38398695
Alignment:
| Q |
31 |
atacttatctcgatccatggtttcatatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacc |
130 |
Q |
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| T |
38398880 |
atacttatctccagccacggtttcaagtttccgttatagtga--attacagcagccctttcaatatctttttggttgacattggggttgtagccaagacc |
38398783 |
T |
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| Q |
131 |
caagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataattgt |
218 |
Q |
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| T |
38398782 |
taagacatgccaagatcggttcagcgggaacgtgcgtttccagaatgttataagaccaggtggcagtgttcctaacttccatagttgt |
38398695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 38398594 - 38398508
Alignment:
| Q |
264 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacacctctgtg |
355 |
Q |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagat----taaagtgt-cttaccagcttctgccaattgtggtacacctctgtg |
38398508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 10171192 - 10171013
Alignment:
| Q |
30 |
aatacttatctcgatccatggtttcatatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaagac |
129 |
Q |
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| T |
10171192 |
aatacttatctccaaccatggcttcatgttcccattgtagtgcata--acagcagcccgatcaatatctttttggttgacgttgggattgtagccaagac |
10171095 |
T |
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| Q |
130 |
ccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttcca |
211 |
Q |
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|||| || ||||| | | |||||| |||||||| |||||||||| || || ||||| ||||||||||||||||| ||||| |
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| T |
10171094 |
ccaacacatgccacgctttgttcagtgggaaagtgcgtttccagaaggttatgagacctggtggcagtgttcctaacttcca |
10171013 |
T |
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