View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_low_38 (Length: 326)
Name: NF12055_low_38
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_38 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 7322058 - 7322366
Alignment:
| Q |
1 |
atcctgatgcaactgaattgcttaccatagttgaaggccaattaactgctggatttattacaccggcaaaagtttatttgaaaactgttaaacctggtga |
100 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
7322058 |
atcctgatgcgactgaattgcttatcatagttgaaagccaattaactgctggatttattacaccggcaaaagtttatttgaaaattgttaaacatggtga |
7322157 |
T |
|
| Q |
101 |
tattgtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatcctaccacg |
200 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |
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| T |
7322158 |
tattgtagtttttccaaaaggacttttgcattttttagttaacactggtgttggaaaagctgttatttttgctgctttaagtagcacaaatcccaccatg |
7322257 |
T |
|
| Q |
201 |
caaatacttgattatctattatttggcaacaatttgtcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagcttaaggctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7322258 |
caaatacttgattatctattatttggcaacgatttatcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagcttaaggctc |
7322357 |
T |
|
| Q |
301 |
agtttgatg |
309 |
Q |
| |
|
||||||||| |
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|
| T |
7322358 |
agtttgatg |
7322366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 7319735 - 7320039
Alignment:
| Q |
1 |
atcctgatgcaactgaattgcttaccatagttgaaggccaattaactgctggatttattacaccggcaaaagtttatttgaaaactgttaaacctggtga |
100 |
Q |
| |
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|||||||||||| ||||||||||| | ||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
7319735 |
atcctgatgcaaatgaattgcttatcgtagttaaaggccagttaactgctggatttattacaccaacaaaagttgatttgaaaactgttaaacctggtga |
7319834 |
T |
|
| Q |
101 |
tattgtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatcctaccacg |
200 |
Q |
| |
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|| | ||||| |||||| ||||||||| |||||| ||||||||||| ||||||||| ||| |||||| |||| ||| |||||| |||| |||| | | |
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| T |
7319835 |
tagtttagttattccaaaaggacttttacattttggagttaacactgatgttggaaatgctattgcttctgcttttttcagtagctcaaaccctaaaatg |
7319934 |
T |
|
| Q |
201 |
caaatacttgattatctattatttggcaacaatttgtcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagcttaaggctc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| | ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
7319935 |
gaaatacttgattatctattatttggcaacgatttatcaacttcaataatcgcaaacccaactttacttgatgtgtcacaaattattaagcttaaggctc |
7320034 |
T |
|
| Q |
301 |
agttt |
305 |
Q |
| |
|
||||| |
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|
| T |
7320035 |
agttt |
7320039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 7324872 - 7324995
Alignment:
| Q |
45 |
actgctggatttattacaccggcaaaagtttatttgaaaactgttaaacctggtgatattgtagtttttccaacaggacttttgcattttttagttaaca |
144 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||||||| |||| ||||||||| || ||||||||||||||||||||||||||| | |||||| |
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| T |
7324872 |
actgctggatttatcacacctaaaaaagtttttatgaaaactcttaatcctggtgatgtttgggtttttccaacaggacttttgcattttattcttaaca |
7324971 |
T |
|
| Q |
145 |
ctggtgttggaaaagctgttgctt |
168 |
Q |
| |
|
||||| |||||| |||||||||| |
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|
| T |
7324972 |
ctggtcctggaaatgctgttgctt |
7324995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 2345269 - 2344969
Alignment:
| Q |
5 |
tgatgcaactgaattgcttaccatagttgaaggccaattaactgctggatttattacaccggcaaaagtttatttgaaaactgttaaacctggtgatatt |
104 |
Q |
| |
|
||||||||||||||| |||| | | || ||||| ||| | ||||| ||||||||||| | | |||||||||| ||||||| |||||||||||||| || |
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|
| T |
2345269 |
tgatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatctt |
2345170 |
T |
|
| Q |
105 |
gtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatcctaccacgcaaa |
204 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||| |||| |
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|
| T |
2345169 |
atagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaa |
2345070 |
T |
|
| Q |
205 |
tacttgattatctattatttggcaacaatttgtcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagcttaaggctcagtt |
304 |
Q |
| |
|
|||||||| |||||||||||| |||||||| |||||||| ||||||||| | |||||||||||||| |||||||| ||| |||| || ||||||||||| |
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|
| T |
2345069 |
tacttgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgatgtgtcacagattctgaaactgaaggctcagtt |
2344970 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
2344969 |
t |
2344969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 305
Target Start/End: Original strand, 6521644 - 6521851
Alignment:
| Q |
98 |
tgatattgtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatcctacc |
197 |
Q |
| |
|
||||||| | |||||||||| |||||| ||||||||| |||||||| |||||| |||| ||||| ||||||||||| ||| |||||| |||| |||| | |
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| T |
6521644 |
tgatattatggtttttccaaaaggactattgcattttgtagttaactctggtgctggagaagctattgcttttgctacttatagtagctcaaagcctagc |
6521743 |
T |
|
| Q |
198 |
acgcaaatacttgattatctattatttggcaacaatttgtcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagcttaagg |
297 |
Q |
| |
|
|| | ||||||| | || | ||||| ||||| || | ||||| ||||||||||| |||||| | ||||| || ||||| || | ||||||||||| |
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|
| T |
6521744 |
tttcagtttcttgattctgtactgtttggaaacaagttacctacttctataattgcaaagactactcttcttgatgtttcacagatcaagaagcttaagg |
6521843 |
T |
|
| Q |
298 |
ctcagttt |
305 |
Q |
| |
|
|| ||||| |
|
|
| T |
6521844 |
ctaagttt |
6521851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 19623629 - 19623490
Alignment:
| Q |
90 |
aaacctggtgatattgtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaa |
189 |
Q |
| |
|
||||| ||||||||| | ||||||||| |||| | ||||||||| |||||| ||||| ||||||||| |||||||| |||||| ||||| || |
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|
| T |
19623629 |
aaaccaggtgatattattgtttttccacaaggaatgttgcattttgcagttaattctggtaagggaaaagctactgcttttggtgcttttagtagtgaaa |
19623530 |
T |
|
| Q |
190 |
atcctaccacgcaaatacttgattatctattatttggcaa |
229 |
Q |
| |
|
||||||| || |||||||||||| ||| || |||||||| |
|
|
| T |
19623529 |
atcctactactcaaatacttgatattcttttgtttggcaa |
19623490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 10570393 - 10570205
Alignment:
| Q |
109 |
tttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatcctaccacgcaaatact |
208 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||| || ||| |||| ||||| ||||||||||| ||| |||||| |||| |||| | || | || |
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|
| T |
10570393 |
tttttccaaaaggactattgcattttgtagttaactcttgtgctggagaagctattgcttttgctacttatagtagctcaaagcctagctttcagtttct |
10570294 |
T |
|
| Q |
209 |
tgattatctattatttggcaacaatttgtcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagcttaagg |
297 |
Q |
| |
|
||||||| || | ||||| ||||| || | ||||| ||||||||||| |||||| | ||||| || ||||| || | ||||||||||| |
|
|
| T |
10570293 |
tgattatttactgtttggaaacaagttacctacttctataattgcaaagactactcttcttgatgtttcacagatcaagaagcttaagg |
10570205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 15648 - 15745
Alignment:
| Q |
98 |
tgatattgtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatccta |
195 |
Q |
| |
|
||||||| | |||||||||| |||||| ||||||||| |||||||| || ||| |||| ||||| ||||||||||| ||| |||||| |||| |||| |
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|
| T |
15648 |
tgatattatggtttttccaaaaggactattgcattttgtagttaactctcgtgctggagaagctattgcttttgctacttatagtagctcaaagccta |
15745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 305
Target Start/End: Original strand, 32984538 - 32984748
Alignment:
| Q |
95 |
tggtgatattgtagtttttccaacaggacttttgcattttttagttaacactggtgttggaaaagctgttgcttttgctgctttaagtagcacaaatcct |
194 |
Q |
| |
|
|||||||||| | |||||||| | ||||| |||||||| | |||||| | |||| || | ||||| ||||||||||| ||| |||||| |||| ||| |
|
|
| T |
32984538 |
tggtgatattatggtttttcctaagggactaatgcattttgttgttaactccggtgctgaagaagctattgcttttgctacttatagtagctcaaagcct |
32984637 |
T |
|
| Q |
195 |
accacgcaaatacttgattatctattatttggcaacaatttgtcaacttcaataattgcaaacactactttacttgaagtgtcacaaattatgaagctta |
294 |
Q |
| |
|
| | || | ||||||||| |||||||| | || || || | ||||| ||||||||| | |||||| | ||||| || |||||||||| |||||||| |
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|
| T |
32984638 |
agctttcagtttcttgattatgtattatttagaaataacttacctacttctataattgcacaaactactcttcttgatgtttcacaaattaagaagctta |
32984737 |
T |
|
| Q |
295 |
aggctcagttt |
305 |
Q |
| |
|
|||||| |||| |
|
|
| T |
32984738 |
aggctcggttt |
32984748 |
T |
|
Back To:
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