View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_39 (Length: 322)

Name: NF12055_low_39
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_39
NF12055_low_39
[»] chr5 (1 HSPs)
chr5 (1-44)||(3261903-3261946)
[»] chr2 (1 HSPs)
chr2 (1-84)||(29315251-29315334)
[»] chr4 (1 HSPs)
chr4 (1-69)||(39599731-39599799)
[»] chr3 (1 HSPs)
chr3 (276-305)||(49465263-49465292)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3261903 - 3261946
Alignment:
Q  1 cagttagaggatttccttccctttcaatgcccttcaaagttgtg 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  3261903 cagttagaggatttccttccctttcaatgcccttcaatgttgtg 3261946  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29315334 - 29315251
Alignment:
Q  1 cagttagaggatttccttccctttcaatgcccttcaaagttgtgggtaatagtgtcaagaagattaagattgacataccttatg 84  Q
    ||||||||||| | ||| |||||||||  |||||||||||||| | || | |||||||||||||||||| ||||| ||||||||    
T  29315334 cagttagaggactacctgccctttcaagacccttcaaagttgttgctagtggtgtcaagaagattaagactgacacaccttatg 29315251  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39599799 - 39599731
Alignment:
Q  1 cagttagaggatttccttccctttcaatgcccttcaaagttgtgggtaatagtgtcaagaagattaaga 69  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||||||  | | | ||||||||||||||||    
T  39599799 cagttagaggacttccttcccattcaaggcccttcagagttgtggccagtggcgtcaagaagattaaga 39599731  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Complemental strand, 49465292 - 49465263
Alignment:
Q  276 cactacccagcaaattcggaggtacaaggt 305  Q
    ||||||||||||||||||||||||||||||    
T  49465292 cactacccagcaaattcggaggtacaaggt 49465263  T

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