View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_40 (Length: 318)

Name: NF12055_low_40
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_40
NF12055_low_40
[»] chr2 (38 HSPs)
chr2 (57-298)||(15829427-15829672)
chr2 (1-42)||(5961671-5961712)
chr2 (2-42)||(37744451-37744491)
chr2 (1-42)||(4104161-4104202)
chr2 (1-42)||(12303787-12303828)
chr2 (1-42)||(16736103-16736144)
chr2 (1-42)||(31450668-31450709)
chr2 (1-42)||(37412921-37412962)
chr2 (1-42)||(40694197-40694238)
chr2 (1-42)||(43183585-43183626)
chr2 (1-41)||(4121106-4121146)
chr2 (1-41)||(18565346-18565386)
chr2 (2-42)||(41377698-41377738)
chr2 (3-42)||(17856534-17856573)
chr2 (1-40)||(28631278-28631317)
chr2 (2-41)||(32933594-32933633)
chr2 (1-42)||(4104502-4104543)
chr2 (1-42)||(4120766-4120807)
chr2 (1-34)||(12304128-12304161)
chr2 (1-34)||(16260881-16260914)
chr2 (1-42)||(16261213-16261254)
chr2 (1-42)||(20297412-20297453)
chr2 (1-42)||(20908854-20908895)
chr2 (5-42)||(27132857-27132894)
chr2 (1-42)||(27476710-27476751)
chr2 (1-42)||(28202862-28202903)
chr2 (1-42)||(28203203-28203244)
chr2 (1-42)||(31451009-31451050)
chr2 (1-42)||(32933934-32933975)
chr2 (1-42)||(37412595-37412636)
chr2 (1-42)||(39150168-39150209)
chr2 (1-33)||(16655949-16655981)
chr2 (1-33)||(27132522-27132554)
chr2 (2-42)||(38275801-38275841)
chr2 (2-42)||(39454453-39454493)
chr2 (1-33)||(39912638-39912670)
chr2 (1-41)||(43183926-43183966)
chr2 (1-41)||(44610865-44610905)
[»] chr7 (17 HSPs)
chr7 (1-42)||(10625108-10625149)
chr7 (1-42)||(31715964-31716005)
chr7 (1-42)||(35085741-35085782)
chr7 (2-42)||(10625428-10625468)
chr7 (2-42)||(47250890-47250930)
chr7 (3-42)||(32706734-32706773)
chr7 (3-41)||(8769285-8769323)
chr7 (136-221)||(3400231-3400316)
chr7 (1-42)||(8769625-8769666)
chr7 (168-209)||(9070845-9070886)
chr7 (1-42)||(18731021-18731062)
chr7 (1-42)||(23472595-23472636)
chr7 (5-42)||(23472903-23472940)
chr7 (1-42)||(35086083-35086124)
chr7 (1-42)||(44486275-44486316)
chr7 (1-42)||(48704151-48704192)
chr7 (1-33)||(39118021-39118053)
[»] chr3 (38 HSPs)
chr3 (1-42)||(41997821-41997862)
chr3 (2-42)||(9028193-9028233)
chr3 (1-42)||(4846939-4846980)
chr3 (1-42)||(8846419-8846460)
chr3 (1-42)||(28688333-28688374)
chr3 (1-42)||(44069125-44069166)
chr3 (1-42)||(45871699-45871740)
chr3 (1-42)||(54107671-54107712)
chr3 (2-42)||(12123092-12123132)
chr3 (1-41)||(12123422-12123462)
chr3 (2-42)||(27940274-27940314)
chr3 (1-41)||(34521600-34521640)
chr3 (1-41)||(35580292-35580332)
chr3 (1-41)||(35753774-35753814)
chr3 (1-41)||(40410715-40410755)
chr3 (3-42)||(8846078-8846117)
chr3 (3-41)||(33812727-33812765)
chr3 (1-39)||(35753408-35753446)
chr3 (1-42)||(7274655-7274696)
chr3 (1-41)||(7743108-7743149)
chr3 (1-42)||(26332321-26332362)
chr3 (1-42)||(31513865-31513906)
chr3 (1-42)||(31514205-31514246)
chr3 (1-42)||(34521268-34521309)
chr3 (1-42)||(41208743-41208784)
chr3 (1-42)||(43527025-43527066)
chr3 (1-42)||(44069466-44069507)
chr3 (1-42)||(45171410-45171451)
chr3 (1-42)||(51170724-51170765)
chr3 (1-42)||(52609705-52609746)
chr3 (2-42)||(7937907-7937947)
chr3 (1-33)||(14353390-14353422)
chr3 (2-42)||(15862519-15862559)
chr3 (137-193)||(16970881-16970937)
chr3 (1-41)||(34629985-34630025)
chr3 (1-41)||(41208404-41208444)
chr3 (2-42)||(41998158-41998198)
chr3 (1-33)||(45872032-45872064)
[»] chr1 (42 HSPs)
chr1 (1-42)||(50921434-50921475)
chr1 (1-42)||(9881554-9881595)
chr1 (1-42)||(16268032-16268073)
chr1 (1-42)||(23281353-23281394)
chr1 (1-42)||(25088018-25088059)
chr1 (1-42)||(33753227-33753268)
chr1 (1-42)||(51691876-51691917)
chr1 (1-42)||(52412600-52412641)
chr1 (2-42)||(14118532-14118572)
chr1 (2-42)||(24590569-24590609)
chr1 (1-41)||(25088358-25088398)
chr1 (1-41)||(29256835-29256875)
chr1 (1-41)||(30293355-30293395)
chr1 (2-42)||(34028723-34028763)
chr1 (2-42)||(34029065-34029105)
chr1 (2-42)||(34279585-34279625)
chr1 (2-42)||(45305753-45305793)
chr1 (2-42)||(50921062-50921102)
chr1 (2-42)||(52412942-52412982)
chr1 (1-40)||(2125545-2125584)
chr1 (2-41)||(19986466-19986505)
chr1 (166-209)||(23519384-23519427)
chr1 (3-42)||(28112723-28112762)
chr1 (1-43)||(18793692-18793734)
chr1 (1-34)||(10654372-10654405)
chr1 (5-42)||(11395007-11395044)
chr1 (1-42)||(14776078-14776119)
chr1 (1-42)||(16267717-16267758)
chr1 (1-42)||(22584695-22584736)
chr1 (1-42)||(28970421-28970462)
chr1 (1-42)||(31125938-31125979)
chr1 (1-42)||(35986234-35986275)
chr1 (1-34)||(50574860-50574893)
chr1 (1-42)||(51692213-51692254)
chr1 (1-33)||(4045110-4045142)
chr1 (1-41)||(10923365-10923405)
chr1 (157-209)||(25726307-25726359)
chr1 (157-209)||(25734715-25734767)
chr1 (1-41)||(30293016-30293056)
chr1 (2-42)||(36077273-36077313)
chr1 (1-33)||(50118358-50118390)
chr1 (1-33)||(51810481-51810513)
[»] chr8 (28 HSPs)
chr8 (1-41)||(758347-758387)
chr8 (3-42)||(31230958-31230997)
chr8 (2-41)||(39912263-39912302)
chr8 (137-223)||(15213376-15213461)
chr8 (137-223)||(32239671-32239757)
chr8 (1-42)||(24456736-24456777)
chr8 (1-42)||(24456995-24457036)
chr8 (1-42)||(37393820-37393861)
chr8 (1-42)||(40040164-40040205)
chr8 (2-42)||(31230615-31230655)
chr8 (2-42)||(39240032-39240072)
chr8 (3-42)||(119119-119158)
chr8 (2-41)||(6843498-6843537)
chr8 (3-42)||(30872785-30872824)
chr8 (3-42)||(44678319-44678358)
chr8 (3-41)||(16645893-16645931)
chr8 (1-42)||(3869292-3869333)
chr8 (1-34)||(5417156-5417189)
chr8 (1-42)||(11639378-11639419)
chr8 (1-42)||(29027311-29027352)
chr8 (1-42)||(35223776-35223817)
chr8 (1-42)||(35224110-35224151)
chr8 (1-33)||(1826134-1826166)
chr8 (1-33)||(1860579-1860611)
chr8 (134-182)||(23893550-23893598)
chr8 (1-41)||(26736128-26736168)
chr8 (1-33)||(37393488-37393520)
chr8 (1-41)||(39240362-39240402)
[»] chr4 (32 HSPs)
chr4 (2-42)||(11242808-11242848)
chr4 (2-42)||(48209950-48209990)
chr4 (1-42)||(18862784-18862825)
chr4 (1-42)||(21217849-21217890)
chr4 (1-42)||(33626207-33626248)
chr4 (1-42)||(44710405-44710446)
chr4 (1-42)||(54136093-54136134)
chr4 (2-42)||(9010849-9010889)
chr4 (1-41)||(24504283-24504323)
chr4 (1-41)||(32385154-32385194)
chr4 (2-42)||(46200486-46200526)
chr4 (1-41)||(46621270-46621310)
chr4 (3-42)||(10014467-10014506)
chr4 (3-42)||(10017817-10017856)
chr4 (3-42)||(10021608-10021647)
chr4 (1-40)||(33625868-33625907)
chr4 (1-40)||(33882292-33882331)
chr4 (1-42)||(1205720-1205761)
chr4 (1-42)||(21218190-21218231)
chr4 (166-223)||(27303131-27303187)
chr4 (1-42)||(29864518-29864559)
chr4 (1-42)||(32384655-32384696)
chr4 (1-42)||(34958834-34958875)
chr4 (1-42)||(38866400-38866441)
chr4 (1-42)||(45683119-45683160)
chr4 (1-42)||(46535525-46535566)
chr4 (3-40)||(46620931-46620968)
chr4 (1-42)||(52914954-52914995)
chr4 (1-41)||(1205381-1205421)
chr4 (2-42)||(9010507-9010547)
chr4 (1-41)||(25218087-25218127)
chr4 (1-41)||(29970196-29970236)
[»] chr6 (13 HSPs)
chr6 (1-39)||(24605216-24605254)
chr6 (1-41)||(24604878-24604918)
chr6 (1-39)||(1158593-1158631)
chr6 (3-41)||(13156179-13156217)
chr6 (3-41)||(13161035-13161073)
chr6 (3-41)||(33971931-33971969)
chr6 (1-42)||(3288932-3288973)
chr6 (1-42)||(3338479-3338520)
chr6 (1-42)||(9173903-9173944)
chr6 (1-42)||(11525108-11525149)
chr6 (1-42)||(35132603-35132644)
chr6 (1-41)||(13155842-13155882)
chr6 (1-41)||(13160698-13160738)
[»] scaffold0809 (1 HSPs)
scaffold0809 (1-42)||(4661-4702)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-42)||(11830-11871)
[»] scaffold0045 (2 HSPs)
scaffold0045 (1-42)||(66082-66123)
scaffold0045 (1-42)||(73414-73455)
[»] chr5 (25 HSPs)
chr5 (1-42)||(7399079-7399120)
chr5 (1-42)||(8418527-8418568)
chr5 (1-42)||(29023939-29023980)
chr5 (1-42)||(35263496-35263537)
chr5 (1-41)||(15476269-15476309)
chr5 (2-42)||(19204946-19204986)
chr5 (1-42)||(10656096-10656137)
chr5 (1-42)||(10656437-10656478)
chr5 (1-42)||(12593458-12593499)
chr5 (1-42)||(21750812-21750853)
chr5 (1-42)||(33699277-33699318)
chr5 (1-42)||(36752244-36752285)
chr5 (3-40)||(39706396-39706433)
chr5 (5-42)||(40589056-40589093)
chr5 (1-42)||(40589397-40589438)
chr5 (5-42)||(40589659-40589696)
chr5 (1-42)||(40590000-40590041)
chr5 (1-42)||(42710693-42710734)
chr5 (1-33)||(5087818-5087850)
chr5 (1-41)||(9693261-9693301)
chr5 (1-33)||(15670494-15670526)
chr5 (2-42)||(18514290-18514330)
chr5 (1-41)||(19205286-19205326)
chr5 (1-33)||(26289031-26289063)
chr5 (1-41)||(31909273-31909313)
[»] scaffold0051 (1 HSPs)
scaffold0051 (3-42)||(40697-40736)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 57 - 298
Target Start/End: Complemental strand, 15829672 - 15829427
Alignment:
Q  57 atacctaaaattctgacttgaaactctt-atgttttgaccttactttgaacttctggctttcaaaaaataatgtttgcaaa-gtctctatttatatccaa 154  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||  ||||||||||||||||||    
T  15829672 atacctaaaattttgacttgaaactcttgatgttttgaccttactttgaacttctagctttcaaaaa-taatgtctgcaagcgtctctatttatatccaa 15829574  T
Q  155 taattagttatggtttaagagaagaaaattgcgttttttgcaccaatccagcttgggaacacaagcaaactg-caattctaaccgtt-gggtgcataaat 252  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||     
T  15829573 taattagttatggtttaagagaagaaaattgggctttttgcaccaatccagcttgggaacacaagcaaactgccaattctaaccgttggggtgcataaac 15829474  T
Q  253 cgaggcacagggg-gcatgtggcagcctctcccatacgatttcttgc 298  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  15829473 cgaggcacaggggcgcatgtggcagcctctcctatacgatttcttgc 15829427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5961712 - 5961671
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  5961712 cgatactacctaaatagttaaggggccaaaaatgcaatttag 5961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 37744491 - 37744451
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  37744491 gatactacctaaatagttaagggaccaaaaatgtaatttag 37744451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4104202 - 4104161
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4104202 cgatactacctaaatagttaagggaccaaaaatgcaatttag 4104161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12303828 - 12303787
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  12303828 cgatactacctaaatagttaagggaccaaaaatgcaatttag 12303787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16736144 - 16736103
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  16736144 cgatactacctaaatagttaagggaccaaaaatgcaatttag 16736103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31450709 - 31450668
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  31450709 cgatactacctaaatagttaagggaccaaaaatgcaatttag 31450668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37412921 - 37412962
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  37412921 cgatactacttaaatagttaaggggccaaaaatgcaatttag 37412962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40694238 - 40694197
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  40694238 cgatactacctaaatagttaagggaccaaaaatataatttag 40694197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43183626 - 43183585
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  43183626 cgatactacctaaatagttaagggactaaaaatgtaatttag 43183585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4121106 - 4121146
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  4121106 cgatactacctaaatagttaagggaccaaaaatgcaattta 4121146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18565346 - 18565386
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  18565346 cgatactacctaaatagttaagggaccaaaaatgcaattta 18565386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 41377698 - 41377738
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  41377698 gatactacctaaatagttaagggaccaaaaatgcaatttag 41377738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 17856534 - 17856573
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  17856534 atactacctaaatagttaagggaccaaaaatgcaatttag 17856573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28631317 - 28631278
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattt 40  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  28631317 cgatgctacctaaatagttaagggaccaaaaatgtaattt 28631278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 32933633 - 32933594
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  32933633 gatactacctaaatagttaagggaccaaaaatgcaattta 32933594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4104502 - 4104543
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  4104502 cgatactacctaaatagttaagggaccaaaaatacaatttag 4104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4120807 - 4120766
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  4120807 cgatactacctaaatagttaagggacaaaaaatgcaatttag 4120766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12304128 - 12304161
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  12304128 cgatactacctaaatagttaagggaccaaaaatg 12304161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16260914 - 16260881
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  16260914 cgatactacctaaatagttaagggaccaaaaatg 16260881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16261213 - 16261254
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  16261213 cgatactacctaaatagttaagggaccaaaaatacaatttag 16261254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20297453 - 20297412
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||| |||||||||||| ||||||||| |||||||    
T  20297453 cgatactacctgaatagttaagggaccaaaaatgaaatttag 20297412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20908854 - 20908895
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  20908854 cgatactacctaaatagttaagggaccaaaaatacaatttag 20908895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 27132857 - 27132894
Alignment:
Q  5 actacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  27132857 actacctaaatagttaagggaccaaaaatgcaatttag 27132894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27476710 - 27476751
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| | ||||||||| |||||||    
T  27476710 cgatactacctaaatagttaagagaccaaaaatgcaatttag 27476751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28202903 - 28202862
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  28202903 cgatattacctaaatagttaagggaccaaaaatgcaatttag 28202862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28203203 - 28203244
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||| ||||||||||||||||| ||||||||| |||||||    
T  28203203 cgatacgacctaaatagttaagggaccaaaaatgcaatttag 28203244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31451009 - 31451050
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  31451009 cgatactacctaaatagttaagggatcaaaaatgcaatttag 31451050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32933934 - 32933975
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  32933934 cgatattacctaaatagttaagggaccaaaaatgcaatttag 32933975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37412636 - 37412595
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  37412636 cgatactaactaaatagttaagggaccaaaaatgcaatttag 37412595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39150168 - 39150209
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  39150168 cgatactacctaaatagttaaaggaccaaaaatgcaatttag 39150209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16655949 - 16655981
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  16655949 cgatactacctaaatagttaagggaccaaaaat 16655981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27132554 - 27132522
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  27132554 cgatactacctaaatagttaagggaccaaaaat 27132522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 38275801 - 38275841
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  38275801 gatactacctaaatagttaagggacaaaaaatgcaatttag 38275841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 39454493 - 39454453
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||| |||||||||||||| ||||||||| |||||||    
T  39454493 gatactacttaaatagttaagggaccaaaaatgcaatttag 39454453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39912670 - 39912638
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  39912670 cgatactacctaaatagttaagggaccaaaaat 39912638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43183926 - 43183966
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||| ||||||| ||||||||| ||||||    
T  43183926 cgatactacctaaataattaagggaccaaaaatgcaattta 43183966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44610905 - 44610865
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||| |||||||||||||||||| ||||||||| ||||||    
T  44610905 cgatattacctaaatagttaagggaccaaaaatgcaattta 44610865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10625149 - 10625108
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  10625149 cgatactacctaaatagttaagggaccaaaaatgtaatttag 10625108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31715964 - 31716005
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  31715964 cgatactacctaaatagttaagggaccaaaaatgcaatttag 31716005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35085782 - 35085741
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  35085782 cgatactacctaaatagttaagggaccaaaaatgcaatttag 35085741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 10625428 - 10625468
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  10625428 gatactacctaaatagttaagggaccaaaaatgcaatttag 10625468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 47250890 - 47250930
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  47250890 gatactacctaaatagttaagggaccaaaaatgcaatttag 47250930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 32706773 - 32706734
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  32706773 atactacctaaatagttaagggaccaaaaatgcaatttag 32706734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 8769323 - 8769285
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  8769323 atactacctaaatagttaagggaccaaaaatgcaattta 8769285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 3400316 - 3400231
Alignment:
Q  136 agtctctatttatatccaataattagttatggtttaagagaagaaaattgcgttttttgcaccaatccagcttgggaacacaagca 221  Q
    |||||||||||||| |  || | || ||| ||||||||||||||||| || ||||||| |||  ||||| ||||| ||||||||||    
T  3400316 agtctctatttatagcatatgactacttagggtttaagagaagaaaactgggttttttccactgatccatcttggaaacacaagca 3400231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8769625 - 8769666
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  8769625 cgatactacctaaatagttaagggactaaaaatgcaatttag 8769666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 9070886 - 9070845
Alignment:
Q  168 tttaagagaagaaaattgcgttttttgcaccaatccagcttg 209  Q
    |||||||||||||| ||| | |||||||||||||||||||||    
T  9070886 tttaagagaagaaatttgtgctttttgcaccaatccagcttg 9070845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18731062 - 18731021
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  18731062 cgatactatctaaatagttaagggaccaaaaatgcaatttag 18731021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23472636 - 23472595
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  23472636 cgatactacctaaatagttaagggaccaaaaatacaatttag 23472595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 23472903 - 23472940
Alignment:
Q  5 actacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  23472903 actacctaaatagttaagggaccaaaaatgcaatttag 23472940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35086083 - 35086124
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  35086083 cgatactacctaaatagttaaaggaccaaaaatgcaatttag 35086124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44486275 - 44486316
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  44486275 cgatactacctaaatagttaaaggaccaaaaatgcaatttag 44486316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48704151 - 48704192
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| |||||||| | ||||||    
T  48704151 cgatactacctaaatagttaagggaccaaaaatatcatttag 48704192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39118053 - 39118021
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  39118053 cgatactacctaaatagttaagggaccaaaaat 39118021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41997862 - 41997821
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  41997862 cgatactacctaaatagttaagggaccaaaaatgtaatttag 41997821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 9028233 - 9028193
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  9028233 gatactacctaaatagttaagggaccaaaaatgtaatttag 9028193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4846939 - 4846980
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4846939 cgatactacctaaatagttaagggaccaaaaatgcaatttag 4846980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8846419 - 8846460
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  8846419 cgatactacctaaatagttaagggaccaaaaatgcaatttag 8846460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28688333 - 28688374
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  28688333 cgatactacctaaatagttaagggacaaaaaatgtaatttag 28688374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44069166 - 44069125
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  44069166 cgatactacctaaatagttaagggaccaaaaatgcaatttag 44069125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45871740 - 45871699
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  45871740 cgatactacctaaatagttaagggaccaaaaatgcaatttag 45871699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54107712 - 54107671
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  54107712 cgatactacctaaatagttaagggaccaaaaatgcaatttag 54107671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12123132 - 12123092
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  12123132 gatactacctaaatagttaagggaccaaaaatgcaatttag 12123092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12123422 - 12123462
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  12123422 cgatactacctaaatagttaagggaccaaaaatgaaattta 12123462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 27940314 - 27940274
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  27940314 gatactacctaaatagttaagggaccaaaaatgaaatttag 27940274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34521600 - 34521640
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  34521600 cgatactacctaaatagttaagggaccaaaaatgcaattta 34521640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35580292 - 35580332
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  35580292 cgatactacctaaatagttaagggaccaaaaatgcaattta 35580332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35753774 - 35753814
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  35753774 cgatactacctaaatagttaaggtaccaaaaatgtaattta 35753814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40410755 - 40410715
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  40410755 cgatactacctaaatagttaagggaccaaaaatgcaattta 40410715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 8846117 - 8846078
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  8846117 atactacctaaatagttaagggaccaaaaatgcaatttag 8846078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 33812765 - 33812727
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  33812765 atactacctaaatagttaagggaccaaaaatgaaattta 33812727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35753446 - 35753408
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatt 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  35753446 cgatactacctaaatagttaagggaccaaaaatgcaatt 35753408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7274696 - 7274655
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||| ||||||| ||||||||| |||||||    
T  7274696 cgatactacctaaatatttaagggaccaaaaatgcaatttag 7274655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7743108 - 7743149
Alignment:
Q  1 cgatactacctaaatagttaaggggcc-aaaaatgtaattta 41  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  7743108 cgatactacctaaatagttaagggaccaaaaaatgtaattta 7743149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26332362 - 26332321
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| ||| ||||||||| |||||||    
T  26332362 cgatactacctaaatagttaggggaccaaaaatgcaatttag 26332321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31513906 - 31513865
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  31513906 cgatactacctaaatagttaatggaccaaaaatgcaatttag 31513865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31514205 - 31514246
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  31514205 cgatactacctaaatagttaagggactaaaaatgcaatttag 31514246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34521309 - 34521268
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||| ||||||| ||||||||| |||||||    
T  34521309 cgatactacctaaataattaagggaccaaaaatgcaatttag 34521268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41208743 - 41208784
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  41208743 cgatactacctaaatagttaagggactaaaaatgcaatttag 41208784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43527066 - 43527025
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  43527066 cgatactacctaaatagttaagggatcaaaaatgcaatttag 43527025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44069466 - 44069507
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  44069466 cgatactacctaaatagttaagggaccaaaaatacaatttag 44069507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45171410 - 45171451
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  45171410 cgatactacctaaatagttaagggactaaaaatgcaatttag 45171451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51170724 - 51170765
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  51170724 cgatactacctaaatagttaagggatcaaaaatgcaatttag 51170765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52609705 - 52609746
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  52609705 cgatagtacctaaatagttaagggaccaaaaatggaatttag 52609746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 7937907 - 7937947
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| || ||||||||| |||||||    
T  7937907 gatactacctaaatagttaaaggaccaaaaatgaaatttag 7937947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14353390 - 14353422
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  14353390 cgatactacctaaatagttaagggaccaaaaat 14353422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 15862519 - 15862559
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  15862519 gatactacctaaatagttaagggacaaaaaatgcaatttag 15862559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 16970937 - 16970881
Alignment:
Q  137 gtctctatttatatccaataattagttatggtttaagagaagaaaattgcgtttttt 193  Q
    ||||||||||||| |  || |||| ||| |||||||||||||||||||| |||||||    
T  16970937 gtctctatttatagcatatgattacttagggtttaagagaagaaaattgagtttttt 16970881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34630025 - 34629985
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  34630025 cgatactacttaaatagttaagggaccaaaaatataattta 34629985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41208444 - 41208404
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||| |||||||||||||| ||||||||| ||||||    
T  41208444 cgatactacttaaatagttaagggaccaaaaatgcaattta 41208404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 41998158 - 41998198
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  41998158 gatactacctaaatagttaagggaccaaaaatacaatttag 41998198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45872032 - 45872064
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  45872032 cgatactacctaaatagttaagggaccaaaaat 45872064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50921434 - 50921475
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  50921434 cgatactacctaaatagttaagggaccaaaaatgtaatttag 50921475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9881595 - 9881554
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  9881595 cgatactacctaaatagttaagggaccaaaaatgcaatttag 9881554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16268032 - 16268073
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  16268032 cgatactacctaaatagttaagggaccaaaaatgcaatttag 16268073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23281353 - 23281394
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  23281353 cgatactacctaaatagttaagggaccaaaaatgcaatttag 23281394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25088059 - 25088018
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  25088059 cgatactacctaaatagttaagggaccaaaaatgcaatttag 25088018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33753268 - 33753227
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  33753268 cgatactacctaaatagttaagggaccaaaaatgcaatttag 33753227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51691917 - 51691876
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  51691917 cgatactacctaaatagttaagggaccaaaaatgcaatttag 51691876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52412641 - 52412600
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  52412641 cgatactacctaaatagttaagggaccaaaaatgtattttag 52412600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 14118572 - 14118532
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  14118572 gatactacctaaatagttaagggaccaaaaatgcaatttag 14118532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 24590569 - 24590609
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  24590569 gatactacctaaatagttaagggaccaaaaatataatttag 24590609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25088358 - 25088398
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  25088358 cgatactacctaaatagttaagggaccaaaaatataattta 25088398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29256875 - 29256835
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  29256875 cgatactacctaaatagttaagggaccaaaaatataattta 29256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30293355 - 30293395
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  30293355 cgatactacctaaatagttaagggaccaaaaatgcaattta 30293395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 34028763 - 34028723
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  34028763 gatactacctaaatagttaagggaccaaaaatgcaatttag 34028723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 34029065 - 34029105
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  34029065 gatactacctaaatagttaagggaccaaaaatgcaatttag 34029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 34279585 - 34279625
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  34279585 gatactacctaaatagttaagggaccaaaaatgcaatttag 34279625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 45305753 - 45305793
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  45305753 gatactacctaaatagttaagggaccaaaaatgcaatttag 45305793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 50921102 - 50921062
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  50921102 gatactacctaaatagttaagggaccaaaaatgcaatttag 50921062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 52412942 - 52412982
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  52412942 gataccacctaaatagttaagggaccaaaaatgtaatttag 52412982  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2125545 - 2125584
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattt 40  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  2125545 cgatactacctaaataattaagggaccaaaaatgtaattt 2125584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 19986466 - 19986505
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  19986466 gatactacctaaatagttaagggaccaaaaatgcaattta 19986505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 23519384 - 23519427
Alignment:
Q  166 ggtttaagagaagaaaattgcgttttttgcaccaatccagcttg 209  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||    
T  23519384 ggtttaagagaagaaaattgtgttttttgcactaatccaacttg 23519427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 28112762 - 28112723
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  28112762 atactacctaaatagttaagggaccaaaaatgcaatttag 28112723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18793734 - 18793692
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttaga 43  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||    
T  18793734 cgatactacctaaataattaagggaccaaaaatgaaatttaga 18793692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10654372 - 10654405
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10654372 cgatactacctaaatagttaagggaccaaaaatg 10654405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 11395007 - 11395044
Alignment:
Q  5 actacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  11395007 actacctaaatagttaagggaccaaaaatgcaatttag 11395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14776078 - 14776119
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| | ||||||||| |||||||    
T  14776078 cgatactacctaaatagttaagtgaccaaaaatgcaatttag 14776119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16267758 - 16267717
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  16267758 cgatattacctaaatagttaagggaccaaaaatgcaatttag 16267717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22584695 - 22584736
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||| |||||||||| |||||||| ||||||||    
T  22584695 cgatactacctaattagttaagggaccaaaaatataatttag 22584736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28970462 - 28970421
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  28970462 cgatactacctaaatagttaaaggaccaaaaatgcaatttag 28970421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31125979 - 31125938
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  31125979 cgatactacctaaatagttaagggatcaaaaatgcaatttag 31125938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35986275 - 35986234
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  35986275 cgatactacctaaatagttaagggaacaaaaatgcaatttag 35986234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50574860 - 50574893
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  50574860 cgatactacctaaatagttaagggaccaaaaatg 50574893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51692213 - 51692254
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  51692213 cgatattacctaaatagttaagggaccaaaaatgcaatttag 51692254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4045142 - 4045110
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||||| ||||||    
T  4045142 cgatactacctaaatagttaaggggctaaaaat 4045110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10923405 - 10923365
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
T  10923405 cgatactacctaaataattaagggaccaaaaatataattta 10923365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 25726307 - 25726359
Alignment:
Q  157 attagttatggtttaagagaagaaaattgcgttttttgcaccaatccagcttg 209  Q
    |||| ||| |||||||||||||||||  | ||||||| |||||||||||||||    
T  25726307 attacttagggtttaagagaagaaaacagagttttttccaccaatccagcttg 25726359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 25734715 - 25734767
Alignment:
Q  157 attagttatggtttaagagaagaaaattgcgttttttgcaccaatccagcttg 209  Q
    |||| ||| |||||||||||||||||  | ||||||| |||||||||||||||    
T  25734715 attacttagggtttaagagaagaaaacagagttttttccaccaatccagcttg 25734767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30293056 - 30293016
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||||||||| || ||||||||| ||||||    
T  30293056 cgatactacctaaatagttaatggaccaaaaatgcaattta 30293016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 36077313 - 36077273
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  36077313 gatactacctaaataattaagggaccaaaaatgcaatttag 36077273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50118390 - 50118358
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  50118390 cgatactacctaaatagttaagggaccaaaaat 50118358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51810481 - 51810513
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  51810481 cgatactacctaaatagttaagggaccaaaaat 51810513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 758387 - 758347
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  758387 cgatactacctaaatagttaaggggccaaaaatgcaattta 758347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 31230958 - 31230997
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  31230958 atactacctaaatagttaagggaccaaaaatgtaatttag 31230997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 39912263 - 39912302
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  39912263 gatactacctaaatagttaagggaccaaaaatgtaattta 39912302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 15213376 - 15213461
Alignment:
Q  137 gtctctatttatatccaataattagttatggtttaagagaagaaaattgcgttttttgcaccaatccagcttgggaacacaagcaaa 223  Q
    ||||||||||||| |  || |||| |||||||| |||||||||||| || | |||||||||||||| ||||| |||| |||||||||    
T  15213376 gtctctatttatagcatatgattacttatggttgaagagaagaaaactgagctttttgcaccaatcaagctt-ggaaaacaagcaaa 15213461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 32239757 - 32239671
Alignment:
Q  137 gtctctatttatatccaataattagttatggtttaagagaagaaaattgcgttttttgcaccaatccagcttgggaacacaagcaaa 223  Q
    ||||| ||||||| || || |||| |||||||| |||||||||||| ||  |||||| |||| ||||||||||| || |||||||||    
T  32239757 gtctcaatttatagcctatgattacttatggttcaagagaagaaaactgaattttttacaccgatccagcttggaaaaacaagcaaa 32239671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24456777 - 24456736
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  24456777 cgatactacctaaatagttaagggaccaaaaatgcaatttag 24456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24456995 - 24457036
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  24456995 cgatactacctaaatagttaagggaccaaaaatgcaatttag 24457036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37393820 - 37393861
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  37393820 cgatactacctaaatagttaagggaccaaaaatgcaatttag 37393861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40040205 - 40040164
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  40040205 cgatactacctaaatagttaagggaccaaaaatgcaatttag 40040164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31230655 - 31230615
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  31230655 gatactacctaaatagttaagggaccaaaaatgtagtttag 31230615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 39240072 - 39240032
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  39240072 gatactacctaaatagttaagggaccaaaaatgcaatttag 39240032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 119158 - 119119
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  119158 atactacctaaatagttaagggaccaaaaatgcaatttag 119119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 6843537 - 6843498
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  6843537 gatactacctaaatagttaagggaccaaaaatgcaattta 6843498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 30872824 - 30872785
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  30872824 atactacctaaatagttaagggaccaaaaatgcaatttag 30872785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 44678358 - 44678319
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  44678358 atactacctaaatagttaagggaccaaaaatgcaatttag 44678319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 16645893 - 16645931
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  16645893 atactacctaaatagttaagggaccaaaaatgcaattta 16645931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3869292 - 3869333
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  3869292 cgatactacctaaatagttaagggaccaaaaatacaatttag 3869333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5417156 - 5417189
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  5417156 cgatactacctaaatagttaagggaccaaaaatg 5417189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11639378 - 11639419
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  11639378 cgatactacctaaatagttaagggacgaaaaatgcaatttag 11639419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29027311 - 29027352
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| | |||||||| ||||||||    
T  29027311 cgatactacctaaatagttaagagaccaaaaatataatttag 29027352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35223817 - 35223776
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||| ||||| ||||||||| |||||||    
T  35223817 cgatactacctaaatagtaaagggaccaaaaatgcaatttag 35223776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35224110 - 35224151
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  35224110 cgatactaactaaatagttaagggaccaaaaatgcaatttag 35224151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1826134 - 1826166
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1826134 cgatactacctaaatagttaagggaccaaaaat 1826166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1860579 - 1860611
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1860579 cgatactacctaaatagttaagggaccaaaaat 1860611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 23893598 - 23893550
Alignment:
Q  134 aaagtctctatttatatccaataattagttatggtttaagagaagaaaa 182  Q
    |||||||||||||||||  |||||||| |||  ||||||||||||||||    
T  23893598 aaagtctctatttatataaaataattacttagagtttaagagaagaaaa 23893550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26736168 - 26736128
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| | ||||||||| ||||||    
T  26736168 cgatactacctaaatagttaagagaccaaaaatgcaattta 26736128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37393520 - 37393488
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37393520 cgatactacctaaatagttaagggaccaaaaat 37393488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39240362 - 39240402
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||| ||||||| ||||||||| ||||||    
T  39240362 cgatactacctaaataattaagggaccaaaaatgcaattta 39240402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 11242808 - 11242848
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  11242808 gatactacctaaatagttaagggaccaaaaatgtaatttag 11242848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 48209990 - 48209950
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  48209990 gatactacctaaatagttaagggaccaaaaatgtaatttag 48209950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18862784 - 18862825
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  18862784 cgatactacctaaatagttaagggaccaaaaatgcaatttag 18862825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21217890 - 21217849
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  21217890 cgatactacctaaatagttaagggaccaaaaatgcaatttag 21217849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33626207 - 33626248
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  33626207 cgatactacctaaatagttaagggaccaaaaatgaaatttag 33626248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44710446 - 44710405
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  44710446 cgatactacctaaatagttaagggaccaaaaatgcaatttag 44710405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54136134 - 54136093
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  54136134 cgatactacctaaatagttaagggaccaaaaatgcaatttag 54136093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9010849 - 9010889
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  9010849 gatactacctaaatagttaagggaccaaaaatataatttag 9010889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24504283 - 24504323
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  24504283 cgatattacctaaatagttaagggaccaaaaatgtaattta 24504323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32385154 - 32385194
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  32385154 cgatactacctaaatagttaagggaccaaaaatgcaattta 32385194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 46200526 - 46200486
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  46200526 gatactacctaaatagttaagggaccaaaaatgcaatttag 46200486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46621270 - 46621310
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  46621270 cgatactacctaaatagttaagggaccaaaaatgcaattta 46621310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 10014506 - 10014467
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  10014506 atactacctaaatagttaagggaccaaaaatgcaatttag 10014467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 10017856 - 10017817
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  10017856 atactacctaaatagttaagggaccaaaaatgcaatttag 10017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 10021647 - 10021608
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  10021647 atactacctaaatagttaagggaccaaaaatgcaatttag 10021608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33625907 - 33625868
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattt 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  33625907 cgatactacctaaatagttaagggaccaaaaatgcaattt 33625868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33882292 - 33882331
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattt 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  33882292 cgatactacctaaatagttaagggaccaaaaatgcaattt 33882331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1205720 - 1205761
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  1205720 cgatactgcctaaatagttaagggaccaaaaatgcaatttag 1205761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21218190 - 21218231
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  21218190 cgatactacctaaatagttaagggatcaaaaatgcaatttag 21218231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 27303187 - 27303131
Alignment:
Q  166 ggtttaagagaagaaaattgcgttttttgcaccaatccagcttgggaacacaagcaaa 223  Q
    |||||||||||||||||||| | ||| |||||| ||||||||| |||| |||||||||    
T  27303187 ggtttaagagaagaaaattgggctttctgcaccgatccagctt-ggaaaacaagcaaa 27303131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29864518 - 29864559
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  29864518 cgatactacctaaatagttaagggaccaaaaatacaatttag 29864559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32384696 - 32384655
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  32384696 cgatactacctaaatagttaagggaccaaaaatacaatttag 32384655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34958875 - 34958834
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  34958875 cgatactacctaaatagttaagggaccaaaaatacaatttag 34958834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38866441 - 38866400
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  38866441 cgatactacctaaatagttaagggaccaaaaatacaatttag 38866400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45683160 - 45683119
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| |  ||||||||||||||||    
T  45683160 cgatactacctaaatagttaagagatcaaaaatgtaatttag 45683119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46535566 - 46535525
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  46535566 cgatactacctaaatagttaagggaccaaaaatacaatttag 46535525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 46620968 - 46620931
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattt 40  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  46620968 atactacctaaatagttaagggaccaaaaatgcaattt 46620931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52914995 - 52914954
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  52914995 cgatactacctaaatagttaagggaccaaaaatacaatttag 52914954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1205421 - 1205381
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| |||||| || ||||||    
T  1205421 cgatactacctaaatagttaagggaccaaaagtgcaattta 1205381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 9010547 - 9010507
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  9010547 gatactacctaaataattaagggaccaaaaatgcaatttag 9010507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25218127 - 25218087
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||| |||||||||||||||||| ||||||||| ||||||    
T  25218127 cgatattacctaaatagttaagggaccaaaaatgaaattta 25218087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29970236 - 29970196
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||| ||| ||||||||| ||||||    
T  29970236 cgatactacctaaatagttatgggaccaaaaatgcaattta 29970196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24605216 - 24605254
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  24605216 cgatactacctaaatagttaagggaccaaaaatgtaatt 24605254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24604918 - 24604878
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  24604918 cgatactacctaaatagttaagggaccaaaaatgcaattta 24604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1158631 - 1158593
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatt 39  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  1158631 cgatactacctaaatagttaaaggaccaaaaatgtaatt 1158593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 13156179 - 13156217
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  13156179 atactacctaaatagttaagggacaaaaaatgtaattta 13156217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 13161035 - 13161073
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  13161035 atactacctaaatagttaagggacaaaaaatgtaattta 13161073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 33971969 - 33971931
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  33971969 atactacctaaatagttaagggaccaaaaatgcaattta 33971931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3288973 - 3288932
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||| ||||| |||||||    
T  3288973 cgatactacctaaatagttaagggaccataaatgcaatttag 3288932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3338520 - 3338479
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  3338520 cgatactacctaaatagttaagggacaaaaaatgcaatttag 3338479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9173944 - 9173903
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  9173944 cgatactacctaaatagttaagggaccaaaaatacaatttag 9173903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11525108 - 11525149
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||| |||||||| ||||||||| |||||||    
T  11525108 cgatactacctaaattgttaagggaccaaaaatgcaatttag 11525149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35132644 - 35132603
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  35132644 cgatactacctaaatagttaatggaccaaaaatgcaatttag 35132603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13155882 - 13155842
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| | |||||||| |||||||    
T  13155882 cgatactacctaaatagttaagagaccaaaaatataattta 13155842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13160738 - 13160698
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||| | |||||||| |||||||    
T  13160738 cgatactacctaaatagttaagagaccaaaaatataattta 13160698  T

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Target: scaffold0809 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4661 - 4702
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4661 cgatactacctaaatagttaagggaccaaaaatgcaatttag 4702  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11830 - 11871
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  11830 cgatactacctaaatagttaagggaccaaaaatgcaatttag 11871  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 66082 - 66123
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  66082 cgatactacctaaatagttaagcgaccaaaaatgtaatttag 66123  T

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Target: scaffold0045; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 73414 - 73455
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  73414 cgatactacctaaatagttaagcgaccaaaaatgtaatttag 73455  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7399120 - 7399079
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  7399120 cgatactacctaaatagttaagggaccaaaaatgcaatttag 7399079  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8418527 - 8418568
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  8418527 cgatactacctaaatagttaagggaccaaaaatgcaatttag 8418568  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29023980 - 29023939
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  29023980 cgatactacctaaatagttaagggaccaaaaatgcaatttag 29023939  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35263537 - 35263496
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  35263537 cgatactacctaaatagttaagggaccaaaaatgcaatttag 35263496  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15476309 - 15476269
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  15476309 cgatactacctaaatagttaagggaccaaaaatataattta 15476269  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 19204986 - 19204946
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  19204986 gatactacctaaatagttaagggaccaaaaatgcaatttag 19204946  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10656137 - 10656096
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  10656137 cgatactacctaaatagttaagggaccaaaaatacaatttag 10656096  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10656437 - 10656478
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  10656437 cgatactacctaaatagttaagggatcaaaaatgcaatttag 10656478  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12593499 - 12593458
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  12593499 cgatactacctaaatagttaagggatcaaaaatgcaatttag 12593458  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21750853 - 21750812
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||| | |||||||    
T  21750853 cgatactacctaaatagttaagggaccaaaaaggcaatttag 21750812  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33699318 - 33699277
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||| ||||| |||||||    
T  33699318 cgatactacctaaatagttaagggaccataaatgcaatttag 33699277  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36752244 - 36752285
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  36752244 cgatactacataaatagttaagggaccaaaaatgcaatttag 36752285  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 39706396 - 39706433
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaattt 40  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  39706396 atactacctaaatagttaagggaccaaaaatgcaattt 39706433  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 40589093 - 40589056
Alignment:
Q  5 actacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  40589093 actacctaaatagttaagggaccaaaaatgcaatttag 40589056  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40589397 - 40589438
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||  ||||||||| |||||||    
T  40589397 cgatactacctaaatagttaaggaaccaaaaatgcaatttag 40589438  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 40589696 - 40589659
Alignment:
Q  5 actacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  40589696 actacctaaatagttaagggaccaaaaatgcaatttag 40589659  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40590000 - 40590041
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||  ||||||||| |||||||    
T  40590000 cgatactacctaaatagttaaggaaccaaaaatgcaatttag 40590041  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42710693 - 42710734
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  42710693 cgatactacctaaatagttaagggaccaaaaatacaatttag 42710734  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5087850 - 5087818
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  5087850 cgatactacctaaatagttaagggaccaaaaat 5087818  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9693261 - 9693301
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  9693261 cgatactacctaaatcgttaagggaccaaaaatgcaattta 9693301  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15670494 - 15670526
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  15670494 cgatactacctaaatagttaagggaccaaaaat 15670526  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 18514330 - 18514290
Alignment:
Q  2 gatactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
T  18514330 gatacttcctaaatagttaagggaccaaaaatgcaatttag 18514290  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19205286 - 19205326
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    ||||||||||||||||||||||||  |||||||| ||||||    
T  19205286 cgatactacctaaatagttaagggatcaaaaatgcaattta 19205326  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26289063 - 26289031
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  26289063 cgatactacctaaatagttaagggaccaaaaat 26289031  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31909273 - 31909313
Alignment:
Q  1 cgatactacctaaatagttaaggggccaaaaatgtaattta 41  Q
    |||||||||||||| ||||||||| ||||||||| ||||||    
T  31909273 cgatactacctaaacagttaagggaccaaaaatgcaattta 31909313  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 40697 - 40736
Alignment:
Q  3 atactacctaaatagttaaggggccaaaaatgtaatttag 42  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  40697 atactacctaaatagttaagggaccaaaaatgcaatttag 40736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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