View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_41 (Length: 314)

Name: NF12055_low_41
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_41
NF12055_low_41
[»] chr7 (1 HSPs)
chr7 (1-314)||(46231699-46232012)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 46232012 - 46231699
Alignment:
Q  1 ccaccttgttatgatcatgagagaacgaggcctcaccattggatatgtatcttcctaattgaggttttgaccaaagtgatggtttcaaatgctgttgtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46232012 ccaccttgttatgatcatgagagaacgaggcctcaccattggatatgtatcttcctaattgaggttttgaccaaagtgatggtttcaaatgctgttgtac 46231913  T
Q  101 agtggcagaaattctgaatttttgggcattttcccagccagtcacataccactgctctagattctgagtcgttgttccaaatgttattattcctttgctt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46231912 agtggcagaaattctgaattcttgggcattttcccagccagtcacataccactgctctagattctgagtcgttgttccaaatgttattattcctttgctt 46231813  T
Q  201 ccaaatactccacaaagtgattgcaaatataccaatctgctctgcgctaaaattctgcataatgcagaacacgatttctgctacgaacctgcctggtagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46231812 ccaaatactccacaaagtgattgcaaatataccaatctgctctgcgctaaaattctgcataatgcagaacacgatttctgctacgaacctgcctggtagc 46231713  T
Q  301 agttcctgctgcac 314  Q
    ||||||||||||||    
T  46231712 agttcctgctgcac 46231699  T

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