View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_49 (Length: 283)
Name: NF12055_low_49
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 41450747 - 41450937
Alignment:
| Q |
6 |
atatgtaatataatagttaagaatgaaggtgtacatcataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaat |
105 |
Q |
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| T |
41450747 |
atatgtaatataatagttaagaatgaaggtgtacatcataatattctctacaactatctaaactataaaaatacatgtttgttttataaaaatgaagaat |
41450846 |
T |
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| Q |
106 |
aacaattatttcannnnnnnnnnaataagaataacaattatttctaacacttccttnnnnnnnntctaacacaatcatgttatatattgattg |
198 |
Q |
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| T |
41450847 |
aacaattatttca--ttttttttaataagaataacaattatttctaacacttccttaaaaaaaatctaacacaatcatgttatatattgattg |
41450937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 25753717 - 25753833
Alignment:
| Q |
43 |
ataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaataacaattatttcannnnnnnnnnaataagaataacaa |
142 |
Q |
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| T |
25753717 |
ataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaataacaattatttca--ttttttttaataagaataaaaa |
25753814 |
T |
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| Q |
143 |
ttatttctaacacttcctt |
161 |
Q |
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||||||||||||||||||| |
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| T |
25753815 |
ttatttctaacacttcctt |
25753833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 16598290 - 16598210
Alignment:
| Q |
37 |
tacatcataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaataacaattatttc |
117 |
Q |
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| T |
16598290 |
tacatcataatattctctacagctatataaattatgaaaatacatgaatgttttattaaaaacaagaataacagttatttc |
16598210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 25753551 - 25753594
Alignment:
| Q |
6 |
atatgtaatataatagttaagaatgaaggtgtacatcataatat |
49 |
Q |
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| T |
25753551 |
atatgtaatataatagttaagaatgaaggtgtacatcataatat |
25753594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 18103733 - 18103886
Alignment:
| Q |
6 |
atatgtaatataatagttaagaatgaaggtgtacatcataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaat |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18103733 |
atatgtaatataatagttaagaatgaaggtgtacatcataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaat |
18103832 |
T |
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| Q |
106 |
aacaattatttcannnnnnnnnnaataagaataacaattatttctaacacttcctt |
161 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
18103833 |
aacaattgtttca--ttttttttaataagaataacaattatttctaacacttcctt |
18103886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 46252704 - 46252783
Alignment:
| Q |
37 |
tacatcataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaataacaattatttc |
117 |
Q |
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| T |
46252704 |
tacatcataatattctctacaac-atctaaattatgaaaatatatgaacgttttataaaaatgaagaataacaattatttc |
46252783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 36840412 - 36840491
Alignment:
| Q |
37 |
tacatcataatattctctacaactatctaaactatgaaaatacatgattgttttataaaaatgaagaataacaattatttc |
117 |
Q |
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|||||||||||||||||| |||| ||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
36840412 |
tacatcataatattctctgcaac-atctaaattataaaaatatatgaatgttttataaaaatgaagaataacaattatttc |
36840491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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