View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_52 (Length: 275)
Name: NF12055_low_52
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 26536391 - 26536123
Alignment:
| Q |
1 |
cattcataacctgaattttcaagacaatgaattagcttccattnnnnnnncatcacatgcagatgcagatagaaacgatcaaaaccagatcacaactacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26536391 |
cattcataacctgaattttcaagacaatgaattagcttccattaaaaaaacatcacatgcagatgcagatagaaacaatcaaaaccagatcacaactacc |
26536292 |
T |
|
| Q |
101 |
taacatatacatgcnnnnnnnnnnn--cataatcatgttcttaatcttacctaacacacataaatcactactaaatcatcaaattcgcattagttaattg |
198 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536291 |
taacatatacatgcaaaaaaaaaaaagcataatcatgttcttaatcttacctaacacacataaatcactactaaatcatcaaattcgcattagttaattg |
26536192 |
T |
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| Q |
199 |
tgttttatggaaattcaaatcaaaattttcattgtgattgaattcagcagatattaataaacctatgct |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536191 |
tgttttatggaaattcaaatcaaaattttcattgtgattgaattcagcagatattaataaacctatgct |
26536123 |
T |
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