View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_53 (Length: 269)
Name: NF12055_low_53
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 30474278 - 30474053
Alignment:
| Q |
24 |
tattttctatataatctatttgctattattataatttaaaattagcacattttttagtgtaaattattcataaagttaactaactacattctaatttaac |
123 |
Q |
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| T |
30474278 |
tattttctatataatctattttctattattataattaaaaattagcacattttttagtgtaaatttttcataaagttaactaactacattctaatttaac |
30474179 |
T |
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| Q |
124 |
attactttttgaatcaaacagggaatgctataaaattaatatgattaaataatgaagtgnnnnnnnncaaagaaattaaataatgaatttagtccttcaa |
223 |
Q |
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| T |
30474178 |
attactttttgaatcaaacagggaatgctataaaattaatatgattaaataatgaagtg-tttttttcaaagaaattaaataatgagtttagtccttcaa |
30474080 |
T |
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| Q |
224 |
aaatatatgatgaatttagtgactaat |
250 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
30474079 |
aaatatatgatgaatttaatgactaat |
30474053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 30472103 - 30472043
Alignment:
| Q |
191 |
caaagaaattaaataatgaatttagtccttcaaaaa-tatatgatgaatttagtgactaat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |
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| T |
30472103 |
caaagaaattaaataatgaatttagtccttcaaaaacaatataatgaatttagcgactaat |
30472043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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