View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_54 (Length: 267)
Name: NF12055_low_54
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5708237 - 5708481
Alignment:
| Q |
1 |
catttaagactatttctcatataacgttgttcaagatcaatatttgactaaaacaaatatagaaacattaacataataaactaagacagaaagacaagac |
100 |
Q |
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| T |
5708237 |
catttaagactatttctcatataacgttgttcaagatcaatatttgaataaaacaaatatagaaacattaacataa---actaagacagaaagacaagac |
5708333 |
T |
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| Q |
101 |
catgtcccatcgtaacaacctcgtctatttgggccgaaaatccaaactgttaccaaagcccaaaacaaaactagggtttcctctttcatttcgtttatat |
200 |
Q |
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| T |
5708334 |
catgtcccatcgtaacaacctcgtctatttgggccgaaaatccaaactgttaccaaagcccaaaacaaaactagggtttcctctttcatttcgtttatat |
5708433 |
T |
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| Q |
201 |
acnnnnnnncacgtaagcaccattgcggtgcagtgcagccttctctgc |
248 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5708434 |
accaaaaaacacgtaagcaccattgcggtgcagtgcagccttctctgc |
5708481 |
T |
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