View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_57 (Length: 265)
Name: NF12055_low_57
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 3384919 - 3385124
Alignment:
| Q |
51 |
atatgaacctagaaaattaaacataactaaatttaaacaataaactttaactaacacgaacaaagaatggaaattagtagcaaactagcgaacaataaac |
150 |
Q |
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| T |
3384919 |
atatgaacctagaaaattaaacatagcaaaatttaatcaataaactttaactaacactaacaaagaatggaaatcagtagcaaactaacaaacaataaac |
3385018 |
T |
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| Q |
151 |
ttttattcatttgaagnnnnnnnnnncctttattcattcaaaaagctaggaaataaacaaagtttgttcataaaatatacacaactgtgttctttcttca |
250 |
Q |
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| T |
3385019 |
ttttattcatttgaa--aaaaaaaaacctttattcattcaaatggctaggaaataaacaaagtttgttcataaaatatacacaactgtgtgctttcttca |
3385116 |
T |
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| Q |
251 |
tctcattg |
258 |
Q |
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| |||||| |
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| T |
3385117 |
tatcattg |
3385124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 1489796 - 1489926
Alignment:
| Q |
119 |
ggaaattagtagcaaactagcgaacaataaacttttattcatttgaagnnnnnnnnnncctttattcattcaaaaagctaggaaataaacaaagtttgtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1489796 |
ggaaattagtagcaaactagcgaacaataaacttttattcatttgaa--aaaaaaaaacctttattcattcaaaaagctaggaaataaacaaagtttgtt |
1489893 |
T |
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| Q |
219 |
cataaaatatacacaactgtgttctttcttcat |
251 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
1489894 |
cataaaatatacacaaccgtgttctttcttcat |
1489926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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