View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_69 (Length: 241)
Name: NF12055_low_69
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9386113 - 9386337
Alignment:
| Q |
1 |
aaatcttctctttcacttcaatattcaacaatggcctacccaacgtagccaccataaaatcacacccaaccttaatatccccaaaactatacctggagaa |
100 |
Q |
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| T |
9386113 |
aaatcttctctttcacttcaatcttcaacaatggcctacccaacgtagccaccataaaatcacacccaaccttaatatccccaaaactatacctggagaa |
9386212 |
T |
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| Q |
101 |
tgatgatgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcgtgtccacgttaacatacgtatgatcttta |
200 |
Q |
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| T |
9386213 |
tgatgatgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcatgtccacgttaacatacatatgatcttta |
9386312 |
T |
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| Q |
201 |
attggattagaacaattgaaatacg |
225 |
Q |
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| T |
9386313 |
attggattagaacaattgaaatacg |
9386337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 9232487 - 9232305
Alignment:
| Q |
37 |
tacccaacgtagccaccataaaatcacacccaaccttaatatccccaaaactatacctggagaatgatgatgattgttccaaaactgcatatacatgatt |
136 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||| || |||| | ||||||| |||||||||| | ||| |||||||| |
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| T |
9232487 |
tacccaatgtagccaccataaaatcacacccaaccttaatatcctcaacacgatactcaaacaatgatg------gttccaaaacagaatacacatgatt |
9232394 |
T |
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| Q |
137 |
agtactactattcccatgtatgttacaacagctcgtgtccacgttaacatacgtatgatctttaattggattagaacaattgaaatacg |
225 |
Q |
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| T |
9232393 |
agtactactattcccatgtctgctacaacgactcgtgtccaccttaacgtaccgtggatcttttattggacttgaacaattgaaatacg |
9232305 |
T |
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