View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_70 (Length: 240)
Name: NF12055_low_70
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_70 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 56069296 - 56069081
Alignment:
| Q |
1 |
tcagtcatttttacaaacttagtaactcgatcagtactattttatgcactgtgtgaacaatctcaaaagataacgttttctttgagtcttctaactattc |
100 |
Q |
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| T |
56069296 |
tcagtcatttttacaaacttagtaactc----agtactattttatgcactgtgtgaacaatctcaaaagataacgttttctttgagtcttctaactattc |
56069201 |
T |
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| Q |
101 |
attcatgtttgaaattaaaaccaattgaattgtaactataataataaagatcaaggacatgatc--ataccacgtggaagcaataaaacagtttggtagc |
198 |
Q |
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| T |
56069200 |
attcatgtttgaaattaaaaccaattgaattttaactata---ataaagatcaaggacatgatcatataccacgtggaagcaataaaacagtttggtagc |
56069104 |
T |
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| Q |
199 |
atatacttaactccagacaaaca |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
56069103 |
atatacttaactccagacaaaca |
56069081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 56072551 - 56072508
Alignment:
| Q |
102 |
ttcatgtttgaaattaaaaccaattgaattgtaactataataat |
145 |
Q |
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| T |
56072551 |
ttcatgtttgaaattacaaccaattgaattgtaactataataat |
56072508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 6819 - 6862
Alignment:
| Q |
102 |
ttcatgtttgaaattaaaaccaattgaattgtaactataataat |
145 |
Q |
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| T |
6819 |
ttcatgtttgaaattacaaccaattgaattgtaactataataat |
6862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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