View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_71 (Length: 239)
Name: NF12055_low_71
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 837322 - 837477
Alignment:
| Q |
1 |
tggtctttttccatcactttttcctcctaaagctaggtaacatttttcccttctgaatggtgttcagatcaaaggaataaaaagtacaatttctctagga |
100 |
Q |
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| T |
837322 |
tggtctttttctatcactttttcctcctaaagctaggtaacatttttcccttctgaatggtgttcagatcaaaggaataaaaagtacaatttctctagga |
837421 |
T |
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| Q |
101 |
gataacatcattgttatgtacctcatgaatcatgatcttggacttcaacttgaacttgaaagaaatcac |
169 |
Q |
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| T |
837422 |
gataacatcattgtt-------------atcatgatcttggacttcaacttgaacttgaaagaaatcac |
837477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 819189 - 819305
Alignment:
| Q |
1 |
tggtctttttccatcactttttcctcctaaagctaggtaacatttttcccttctgaatggtgttcagatcaaaggaataaaaagtacaatttctctagga |
100 |
Q |
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| T |
819189 |
tggtctttttccatcactttttcctcctaaagctaggtaccacctttcccttctaaatggtgatcaaatcaaaggaataaaaagtacaatttctctagga |
819288 |
T |
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| Q |
101 |
gataacatcattgttat |
117 |
Q |
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| T |
819289 |
gataacatcattgttat |
819305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 837497 - 837533
Alignment:
| Q |
189 |
ctttgactcatgtttcggttttatgtacttcaaattg |
225 |
Q |
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| T |
837497 |
ctttgactcatgttttggttttatgtacttcaaattg |
837533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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