View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12055_low_76 (Length: 221)

Name: NF12055_low_76
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12055_low_76
NF12055_low_76
[»] scaffold0027 (1 HSPs)
scaffold0027 (10-129)||(64246-64365)
[»] chr2 (7 HSPs)
chr2 (10-129)||(25495064-25495183)
chr2 (10-112)||(17685969-17686071)
chr2 (80-129)||(35039241-35039290)
chr2 (24-119)||(20918869-20918962)
chr2 (91-129)||(26732633-26732671)
chr2 (91-129)||(34528864-34528902)
chr2 (91-129)||(34542838-34542876)
[»] scaffold0091 (1 HSPs)
scaffold0091 (10-129)||(19062-19181)
[»] chr3 (5 HSPs)
chr3 (10-113)||(14537420-14537523)
chr3 (23-129)||(50825804-50825910)
chr3 (23-129)||(50849950-50850056)
chr3 (10-111)||(27339786-27339887)
chr3 (47-129)||(9184580-9184663)
[»] chr1 (6 HSPs)
chr1 (10-113)||(41745506-41745609)
chr1 (10-113)||(28459059-28459162)
chr1 (10-129)||(11949613-11949735)
chr1 (90-129)||(13451374-13451413)
chr1 (96-129)||(13804863-13804896)
chr1 (21-105)||(43455340-43455423)
[»] chr4 (6 HSPs)
chr4 (10-129)||(10639637-10639757)
chr4 (10-129)||(52297153-52297271)
chr4 (80-129)||(1876363-1876412)
chr4 (80-129)||(1890478-1890527)
chr4 (80-129)||(772506-772557)
chr4 (23-115)||(12426244-12426335)
[»] scaffold0278 (1 HSPs)
scaffold0278 (10-129)||(9682-9801)
[»] scaffold0039 (1 HSPs)
scaffold0039 (10-129)||(39424-39544)
[»] chr5 (2 HSPs)
chr5 (21-113)||(21930695-21930787)
chr5 (10-94)||(31412082-31412166)
[»] chr7 (5 HSPs)
chr7 (64-129)||(4662693-4662758)
chr7 (10-94)||(25728516-25728600)
chr7 (91-129)||(1887728-1887766)
chr7 (91-129)||(1901829-1901867)
chr7 (91-129)||(24186927-24186965)
[»] chr8 (3 HSPs)
chr8 (10-106)||(26872259-26872356)
chr8 (80-129)||(16774573-16774622)
chr8 (21-85)||(17974915-17974978)
[»] chr6 (7 HSPs)
chr6 (10-129)||(12452470-12452590)
chr6 (10-85)||(33299373-33299448)
chr6 (21-85)||(13827016-13827080)
chr6 (80-129)||(5995939-5995988)
chr6 (91-129)||(19827371-19827409)
chr6 (80-129)||(15390235-15390284)
chr6 (80-129)||(25713052-25713101)
[»] scaffold0016 (1 HSPs)
scaffold0016 (10-129)||(24864-24982)
[»] scaffold1896 (1 HSPs)
scaffold1896 (21-85)||(834-898)
[»] scaffold0497 (1 HSPs)
scaffold0497 (80-129)||(12069-12118)
[»] scaffold0431 (1 HSPs)
scaffold0431 (23-115)||(3640-3731)


Alignment Details
Target: scaffold0027 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 64365 - 64246
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64365 tgtgatgatacttcctgtgattagatctagaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 64266  T
Q  110 tttattaattacacctctgt 129  Q
    ||||||||||||||||||||    
T  64265 tttattaattacacctctgt 64246  T

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Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 25495064 - 25495183
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||||||||||||||||||||||| ||||||||||||||    
T  25495064 tgtgatgatacttcctgtgattagatctagaccttctgattcatcagacggtcaagatctatccagtctgagcccaattgttttttaatttcactacagt 25495163  T
Q  110 tttattaattacacctctgt 129  Q
    |||||| |||||||||||||    
T  25495164 tttattgattacacctctgt 25495183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 17686071 - 17685969
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||| ||    
T  17686071 tgtgatgagacttcctgtgattagatctagaccttcggattcatcagacggtccatatctatccagtctgagcccaattgtttttaaatttcactactgt 17685972  T
Q  110 ttt 112  Q
    |||    
T  17685971 ttt 17685969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 35039241 - 35039290
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||| ||||    
T  35039241 agcccaattgtttttaaaattcactacagttttgttaattatacccctgt 35039290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 20918869 - 20918962
Alignment:
Q  24 ctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagttttattaatt 119  Q
    ||||||||| ||||  ||||| |||||| ||  ||||||||||||| ||||||||| | ||||||| |||||| ||||||||| ||||| ||||||    
T  20918869 ctgtgattaaatctggaccttgtgattcttcagacggtccagatctatccagtctgtg-ccaattg-ttttaattttcactactgtttttttaatt 20918962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 26732671 - 26732633
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  26732671 tttttaatttcactacagttgtattaattacacctctgt 26732633  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 34528902 - 34528864
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  34528902 tttttaatttcactacaattttattaattacacctctgt 34528864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 34542876 - 34542838
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  34542876 tttttaatttcactacaattttattaattacacctctgt 34542838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 19062 - 19181
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||  |||||||||||||  |||||||||||||||||||||||||| || ||||||||    
T  19062 tgtgatgatacttcctgtgattagatctagaccttctgtttcatcagacggtccagatctaaccagtctgagcccaattgtttttaaaattgactacagt 19161  T
Q  110 tttattaattacacctctgt 129  Q
    ||| ||||||||||||||||    
T  19162 tttgttaattacacctctgt 19181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 14537523 - 14537420
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||    
T  14537523 tgtgatgatacttgctgtgattagatctagaccttctgattcatcgaacggtccagatctttccagtctgagcccaattgtttttaaaattcactactgt 14537424  T
Q  110 ttta 113  Q
    ||||    
T  14537423 ttta 14537420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 50825804 - 50825910
Alignment:
Q  23 cctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagttttattaattaca 122  Q
    ||||||||| |||||  | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50825804 cctgtgattggatctggatcctctgattaatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacaattttattaattaca 50825903  T
Q  123 cctctgt 129  Q
    |||||||    
T  50825904 cctctgt 50825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 50850056 - 50849950
Alignment:
Q  23 cctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagttttattaattaca 122  Q
    ||||||||| |||||  | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50850056 cctgtgattggatctggatcctctgattaatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacaattttattaattaca 50849957  T
Q  123 cctctgt 129  Q
    |||||||    
T  50849956 cctctgt 50849950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 27339887 - 27339786
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||| |||||||||||||||| | |||||||| |||||||| ||    
T  27339887 tgtgatgatacttcctgtgattagatctagaccttctgattcatcagacggtctagatctatccagtctgagcccaactatttttaaaattcactactgt 27339788  T
Q  110 tt 111  Q
    ||    
T  27339787 tt 27339786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 9184663 - 9184580
Alignment:
Q  47 gattcatcgaacggtccagatctgtccagtctgagcccaattg-tttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||  ||||||||||||    
T  9184663 gattaatcgaacggtccagatctatccagtctgagcccaattgctttttaaatttcactactgttttcttttttacacctctgt 9184580  T

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Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 41745609 - 41745506
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||    
T  41745609 tgtgatgatacttgctgtgattagatctagaccttctgattcatcgaacggtccagatctttccagtctgagcccaattgtttttaaaattcactactgt 41745510  T
Q  110 ttta 113  Q
    ||||    
T  41745509 ttta 41745506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 28459059 - 28459162
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    |||||||||||||| |||||||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||| | |||||||| |||||||| ||    
T  28459059 tgtgatgatacttcatgtgattagatctagaccttctgattcatcagacggtccagatctatccagtctgagcccaactatttttaaaattcactactgt 28459158  T
Q  110 ttta 113  Q
    ||||    
T  28459159 ttta 28459162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 11949613 - 11949735
Alignment:
Q  10 tgtgatgatacttcc-tgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattg--tttttaaatttcactac 106  Q
    |||||||| |||||| |||||||| ||||| |||||||||| ||||  ||||| ||||||| ||||||||||||| |||||  |||||||| ||||||||    
T  11949613 tgtgatgagacttccctgtgattatatctacaccttctgatccatcagacggttcagatctatccagtctgagccaaattgtttttttaaaattcactac 11949712  T
Q  107 agttttattaattacacctctgt 129  Q
    |||||||||||||||||||||||    
T  11949713 agttttattaattacacctctgt 11949735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 13451374 - 13451413
Alignment:
Q  90 tttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  13451374 tttttaaaattcactacagttttgttaattacacctctgt 13451413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 13804896 - 13804863
Alignment:
Q  96 aatttcactacagttttattaattacacctctgt 129  Q
    ||||||||||||||||| ||||||||||||||||    
T  13804896 aatttcactacagttttgttaattacacctctgt 13804863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 43455340 - 43455423
Alignment:
Q  21 ttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcacta 105  Q
    ||||||||||| |||||  | | ||||||| |||  |||||| |||| |||||||||||||||| | |||||||||| |||||||    
T  43455340 ttcctgtgattggatctggatcctctgattaatcagacggtctagatttgtccagtctgagccc-actgtttttaaaattcacta 43455423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 10639637 - 10639757
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattg-tttttaaatttcactacag 108  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||  |||||| |||||| ||||||||||||||||||| ||||| |||||||||||||    
T  10639637 tgtgatgatatttcctgtgattagatctagaccttctaattcatcagacggtcaagatctatccagtctgagcccaattgtttttttaatttcactacag 10639736  T
Q  109 ttttattaattacacctctgt 129  Q
    |||||||||||||||||||||    
T  10639737 ttttattaattacacctctgt 10639757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 52297153 - 52297271
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    |||||||| |||||||||||||||||||| |||||||||  ||||  |||||||| || | ||||||||||||||| ||||| || ||||||||||||||    
T  52297153 tgtgatgagacttcctgtgattagatctagaccttctgag-catccgacggtccatatttatccagtctgagcccatttgttatttaatttcactacagt 52297251  T
Q  110 tttattaattacacctctgt 129  Q
    ||||||||||| ||||||||    
T  52297252 tttattaattatacctctgt 52297271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 1876412 - 1876363
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  1876412 agcccaattgttttcaaatttcactacagttttgttaattacacctctgt 1876363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 1890527 - 1890478
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  1890527 agcccaattgttttcaaatttcactacagttttgttaattacacctctgt 1890478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 772506 - 772557
Alignment:
Q  80 agcccaattgtt--tttaaatttcactacagttttattaattacacctctgt 129  Q
    ||||||||||||  ||| |||||||||||||||||||||| |||||||||||    
T  772506 agcccaattgttccttttaatttcactacagttttattaaatacacctctgt 772557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 12426335 - 12426244
Alignment:
Q  23 cctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagttttatt 115  Q
    ||||||||| |||||  | | ||||||| |||  |||||||||||  ||||||||||||||| | |||||||||| |||| ||| ||||||||    
T  12426335 cctgtgattggatctggatcctctgattaatcagacggtccagattggtccagtctgagccc-actgtttttaaaattcattactgttttatt 12426244  T

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Target: scaffold0278 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 9682 - 9801
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||| |||||||||| ||||||||||||| || |||||||||||    
T  9682 tgtgatgatacttcctgtgattagatctagaccttctgattcatcagactgtccagatctatccagtctgaccccaattgtttttgaaattcactacagt 9781  T
Q  110 tttattaattacacctctgt 129  Q
    ||| |||||||||| |||||    
T  9782 tttgttaattacacatctgt 9801  T

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Target: scaffold0039 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 39544 - 39424
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattg-tttttaaatttcactacag 108  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||  |||||| |||||| ||||||||||||| ||||| ||||| |||||||||||||    
T  39544 tgtgatgatatttcctgtaattagatctagaccttctgattcatcagacggtcaagatctatccagtctgagcctaattgtttttttaatttcactacag 39445  T
Q  109 ttttattaattacacctctgt 129  Q
    |||||||||||||||||||||    
T  39444 ttttattaattacacctctgt 39424  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 21930695 - 21930787
Alignment:
Q  21 ttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagtttta 113  Q
    |||||||||||||||||| |||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  21930695 ttcctgtgattagatctagaccttctgattcatcagacggtctagatttgtccagtctgagcccaattgtttttaaaattcactactgtttta 21930787  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 31412082 - 31412166
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgttttt 94  Q
    |||||||| |||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||  ||||||||    
T  31412082 tgtgatgagacttcctgtgattagatctagaccttctgattcatcagacggtccagatctatccagtctgagcccctttgttttt 31412166  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 4662758 - 4662693
Alignment:
Q  64 agatctgtccagtctgagcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4662758 agatctgtccagtctgagcccaattgtttttaaatttcactacagttttattaattacacttctgt 4662693  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 25728600 - 25728516
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgttttt 94  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||  ||||| ||||||||| |||||||    
T  25728600 tgtgatgatacttcctgtgattagatctagaccttctgattcatcagacgatccagatctaaccagtttgagcccaactgttttt 25728516  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 1887766 - 1887728
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1887766 tttttaatttcactacagttttattaattacacctctgt 1887728  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 1901867 - 1901829
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1901867 tttttaatttcactacagttttattaattacacctctgt 1901829  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 24186965 - 24186927
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  24186965 tttttaatttcactacagttgtattaattacacctctgt 24186927  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 26872356 - 26872259
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaat-tgtttttaaatttcactac 106  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||| ||||||||||||||| | | |||||||| ||||||||    
T  26872356 tgtgatgatacttcctgtgattagatgtagaccttttgattcatcgaacggttcagatctatccagtctgagcccactatttttttaaaattcactac 26872259  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 16774573 - 16774622
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  16774573 agcccaattgttttcaaatttcactacagttttgttaattacacctctgt 16774622  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 17974915 - 17974978
Alignment:
Q  21 ttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagccca 85  Q
    |||||||||||||||||| |||||| ||||||||  ||||||||||| | |||||||||||||||    
T  17974915 ttcctgtgattagatctagaccttccgattcatcatacggtccagat-tatccagtctgagccca 17974978  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 12452590 - 12452470
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaat-tgtttttaaatttcactacag 108  Q
    |||||||| ||||||| |||||| ||||  |||||| ||||||||  ||||||||||||| |||| |||||||||||| |  ||| ||| ||||||||||    
T  12452590 tgtgatgagacttcctatgattaaatctggaccttcagattcatcagacggtccagatctatccaatctgagcccaatcttctttaaaaattcactacag 12452491  T
Q  109 ttttattaattacacctctgt 129  Q
    |||||||||||||||||||||    
T  12452490 ttttattaattacacctctgt 12452470  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 33299373 - 33299448
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagccca 85  Q
    |||||||| |||||||||||||||| ||| |||||| ||||||||  ||||||||||| | |||||||||||||||    
T  33299373 tgtgatgagacttcctgtgattagacctagaccttccgattcatcagacggtccagatttatccagtctgagccca 33299448  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 13827016 - 13827080
Alignment:
Q  21 ttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagccca 85  Q
    |||||||||||||||||| |||||| |||||||| ||| |||||||| | |||||||||||||||    
T  13827016 ttcctgtgattagatctagaccttccgattcatcaaacagtccagatttatccagtctgagccca 13827080  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 5995939 - 5995988
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  5995939 agcccaattgctttttaatttcactacagttttattgattacacctctgt 5995988  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 19827409 - 19827371
Alignment:
Q  91 ttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  19827409 tttttaatttcactacagttttattaattacacctctgt 19827371  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 15390284 - 15390235
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||| ||||    
T  15390284 agcccaattgtttttaaaattcactacagttttgttaattatacccctgt 15390235  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 25713052 - 25713101
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    |||||||||| ||||||| |||||||||||||| ||||||| ||||||||    
T  25713052 agcccaattgcttttaaaattcactacagttttgttaattatacctctgt 25713101  T

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Target: scaffold0016 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 24864 - 24982
Alignment:
Q  10 tgtgatgatacttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagt 109  Q
    |||||||| |||||||||||||||||||| | ||||  |||||||  |||||||| || | |||||||||||||| | |||||||||| |||||||| ||    
T  24864 tgtgatgagacttcctgtgattagatctagatcttccaattcatcagacggtccatatttatccagtctgagccc-actgtttttaaaattcactactgt 24962  T
Q  110 tttattaattacacctctgt 129  Q
    |||| |  ||||||||||||    
T  24963 tttactttttacacctctgt 24982  T

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Target: scaffold1896 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 834 - 898
Alignment:
Q  21 ttcctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagccca 85  Q
    |||||||||||||||||| |||||| ||||||||  ||||||||||| |  ||||||||||||||    
T  834 ttcctgtgattagatctagaccttccgattcatcagacggtccagatttaaccagtctgagccca 898  T

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Target: scaffold0497 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 12069 - 12118
Alignment:
Q  80 agcccaattgtttttaaatttcactacagttttattaattacacctctgt 129  Q
    ||||||||||||||| ||||||||| || |||||||||||| ||| ||||    
T  12069 agcccaattgttttttaatttcactgcaattttattaattatacccctgt 12118  T

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Target: scaffold0431 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 3640 - 3731
Alignment:
Q  23 cctgtgattagatctaaaccttctgattcatcgaacggtccagatctgtccagtctgagcccaattgtttttaaatttcactacagttttatt 115  Q
    ||||||||| |||||  | | ||||||| |||  |||||||||||  ||||||||||||||| | |||||||||| |||| ||| ||||||||    
T  3640 cctgtgattggatctggatcctctgattaatcagacggtccagattggtccagtctgagccc-actgtttttaaaattcattactgttttatt 3731  T

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