View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12055_low_8 (Length: 813)
Name: NF12055_low_8
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 36123001 - 36123353
Alignment:
| Q |
1 |
aagaacagtaaagtagcacatgtgacgttgtgcgtggcatggcagggtgtgaaatgtctgtttgtgcagtaacctgtggggccctcattcatttcagtct |
100 |
Q |
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| T |
36123001 |
aagaacagtaaagtagcacatgtgacgttgtgcgtggcatggcagggtgtgaaatgtctgtttgtgcagtaacctgtggggccctcattcatttcagtct |
36123100 |
T |
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| Q |
101 |
aagatatgtttgctgctaccaatatttaataataaaatcaaaggacaaaataggaccctcctccaaacagcaacgttgcaccgtatatatgcatccttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36123101 |
aagatatgtttgctgctaccaatatttaataataaaatcaaaggacaaaataggaccctcctccaaacagcaacgttgcaccgtatatatgcatccttgt |
36123200 |
T |
|
| Q |
201 |
gctgtcgctgtattgtgtctgtctacactactacatttaattcatacacctacgtaaaaaacaatcatacaccattcgaatnnnnnnnntgatatttgaa |
300 |
Q |
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| T |
36123201 |
gctgtcgctgtattgtgcctgtctacactactacattcaattcatacacctacgtaaaaaacaatcatacaccattcgaataaaaaaaatgatatttaaa |
36123300 |
T |
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| Q |
301 |
aaataattttgtgacaacttttataataatcttccttctcatacttacaccgtc |
354 |
Q |
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| T |
36123301 |
aaataatttt-tgacaacttttataataatcttccttctcatacttacatcgtc |
36123353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 438 - 794
Target Start/End: Original strand, 36123438 - 36123792
Alignment:
| Q |
438 |
gttgttgaaatgatattcttctaaataaaacgatacatagttaataacatagatcatatttcaaattactataaacaatgcaaaaaattgaaccaattgt |
537 |
Q |
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| T |
36123438 |
gttgttgaaataatattcttctaaataaaacaatacatagttaataacatagatcatatttcaaattactataaacaatgcaaaaaattgaaccaattgt |
36123537 |
T |
|
| Q |
538 |
gttcaaaattgtgattgatacatgcttagtcnnnnnnnnnncctttcctttaaatatgcttatacattttagtcacatgctgtgtgacttgcgttttatt |
637 |
Q |
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| T |
36123538 |
gttcaaaattgtgattgatacatgcttagtctttttttt--cctttcctttaaatatgcttagacattttagtcacatgctgtgtgacttgcgttttatt |
36123635 |
T |
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| Q |
638 |
cttagacatttcactcacatgatatgttgtgacctagtgttttgagaatatgctcatannnnnnnggagtacgctgtaaaactactcccacaaattgacg |
737 |
Q |
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| T |
36123636 |
cttagacatttcactcacatgatatgttgtgacctagtgttttgagaatatgctcatatttttttggagtacgctgtaaaattactccctcaaattgacg |
36123735 |
T |
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| Q |
738 |
actcaagaatttacttaagaaagagtgagtaacaaatgagaaatcatatgcttaggc |
794 |
Q |
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| T |
36123736 |
actcaagaatttacttaagaaagagtgagtaacaaatgagaaatcatatgcttaggc |
36123792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 22491379 - 22491339
Alignment:
| Q |
290 |
tgatatttgaaaaataattttgtgacaacttttataataat |
330 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
22491379 |
tgatatttgaacaatcattttgtgacaacttttataataat |
22491339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 17367424 - 17367365
Alignment:
| Q |
290 |
tgatatttgaaaaataattttgtgacaacttttataataatcttccttctcatacttaca |
349 |
Q |
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||||||||||| ||| |||||||| |||||||||| ||||| ||| |||||||| ||||| |
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| T |
17367424 |
tgatatttgaacaattattttgtgtcaacttttatgataattttctttctcatatttaca |
17367365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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