View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12055_low_9 (Length: 799)
Name: NF12055_low_9
Description: NF12055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12055_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 13 - 783
Target Start/End: Original strand, 2795678 - 2796470
Alignment:
| Q |
13 |
agatgaatttgttgacgttcataagaggtaacggagaatatcagaatacaaaattttaaaaaatatggttctaatatggataaaacttctgcaaatcgga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795678 |
agatgaatttgttgacgttcataagaggtaacggagaatatcagaatacaaaatttaaaaaaatatggttctaatatggataaaacttctgcaaatcgga |
2795777 |
T |
|
| Q |
113 |
attttgatgttataaattttattctgcagaatacctgtaacaaccgcttccccaatggcacgagctccatcaatccgaaggttgaatagcgaaaagagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795778 |
attttgatgttataaattttattctgcagaatacctgtaacaaccgcttccccaatggcacgagctccatcaatccgaaggttgaatagcgaaaagagag |
2795877 |
T |
|
| Q |
213 |
cagtaagtgatttaccgttgcacgaattttatgatttaatatttgtttctctgctatagtttctaagtgaaatcaatctcttttttgccatcaagtcttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795878 |
cagtaagtgatttaccgttgcacgaattttatgatttaatatttgtttctctgctatagtttctaagtgaaatcaatctcttttttgccatcaagtcttt |
2795977 |
T |
|
| Q |
313 |
ctacattatgtccattttcacttgtaacaattttataaacaattttgcaacgagtcattcaatatattttcttttctgatagtaggaaagagtatgtcga |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2795978 |
ctacattatgtccattttcacttataacaattttataaacaattccgcaaggagtcattcaatatattttcttttctgataataggaaagagtatgtcga |
2796077 |
T |
|
| Q |
413 |
cacaaaaactgaacaaatgtttagacatatttgattcctctaaagtgagtgaagtgtaaagtaagaaatcaagagtg-------ttcaataatgatatgt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2796078 |
cacaaaaactgaacaaatgtttagacatatttgattcctctaaagtgagtaaagtgtaaagcaagaaatcaagagtgttaatatttcaataatgatatgt |
2796177 |
T |
|
| Q |
506 |
t-------atacatgcacatatacaatttaccattagtttgtctattaatattactcactta----------acactgatttgttcattttagaggagtc |
588 |
Q |
| |
|
| ||||||| |||| |||||||| ||||||||||||||||||||||||||||||| | | || |||| || ||||||||||||| |
|
|
| T |
2796178 |
tatacataatacatgtacatttacaattt--cattagtttgtctattaatattactcacttacactctaattaaagtggtttgctcgttttagaggagtc |
2796275 |
T |
|
| Q |
589 |
ggatcctatttaaacctttggatggctagaacagctaatcaatttcatagttcagaaattcaatggcttctctagagggtatgtgtatcctattttgtat |
688 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2796276 |
ggatcctatctaaacctttggatggctagaacagctaatcaatttcacagttcagagaacttatggctcctctagagggtatgtgtatcctattttgtat |
2796375 |
T |
|
| Q |
689 |
cccttgtgacaatgattagcatttagttgaagaagattccacctctcaaaccctttgtagtaatttagtagtttaaagttagtttctctatatct |
783 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2796376 |
cccttgtgacaatgattagcatttaggtgaagaagattccacctctcaaaccctttgtagtaatttagtagtttaaagttagtttctctatatct |
2796470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 48670950 - 48671084
Alignment:
| Q |
158 |
gcttccccaatggcacgagctccatcaatccgaaggttgaatagcgaaaagagagcagtaagtgatttaccgttgcacgaattttatgattt-aatattt |
256 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| ||| | || ||||| |||| ||||||| |||| |||| | | ||||||||||| ||||||| |
|
|
| T |
48670950 |
gcttcctcaatggcacgagctccatcagtccgaaggatgactggccaaaagggagcggtaagtggtttaacgttacgcatcttttatgattttaatattt |
48671049 |
T |
|
| Q |
257 |
gtttctctgctatagtttctaagtgaaatcaatct |
291 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48671050 |
gtttctctgctatagtttccaagtgaaatcaatct |
48671084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 48671632 - 48671699
Alignment:
| Q |
576 |
ttttagaggagtcggatcctatttaaacctttggatggctagaacagctaatcaatttcatagttcaga |
644 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
48671632 |
ttttagaggagcttgatcctatt-aaatctttggatggctagaacaactaatcaatttcgtacttcaga |
48671699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 16391689 - 16391722
Alignment:
| Q |
158 |
gcttccccaatggcacgagctccatcaatccgaa |
191 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
16391689 |
gcttcctcaatggcacgagctccatcaatccgaa |
16391722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University